Streptococcus pneumoniae CDC1873-00 , whole [asmbl_id: NC_000000].2263323, GC%: 39.58%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 68 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11023336..1023347 attL    GTTTTTTAAAAA 0.0 Click
21027638..1027649 attL    AAAATCCATAAT 0.0 Click
31027892..1027903 attL    TTTTTTATTTTT 0.0 Click
41037594..1037887 PROPHAGE_Staphy_N315: transposase; SP187300_0127; phage(gi15927655) 6e-06 Click
5complement(1038009..1038977) PHAGE_Salmon_7_11: putative ribose-phosphate pyrophosphokinase; SP187300_0126; phage(gi345461227) 1e-19 Click
6complement(1039930..1040427) carbonate dehydratase; SP187300_0123 0.0 Click
7complement(1040500..1041762) PHAGE_Bacill_W.Ph.: gp46; SP187300_0122; phage(gi371671106) 1e-06 Click
8complement(1041875..1042432) phosphoglycerate mutase family protein; SP187300_0121 0.0 Click
9complement(1042392..1042835) PHAGE_Clostr_st: putative dUTPase; SP187300_0120; phage(gi80159764) 3e-30 Click
10complement(1043109..1043423) PHAGE_Strept_MM1: N-acetylmuramoyl-L-alanine amidase; SP187300_0119; phage(gi15088793) 1e-57 Click
111043494..1043661 PHAGE_Entero_P22: hypothetical protein P22gp16; SP187300_0118; phage(gi9635553) 2e-06 Click
12complement(1043816..1044019) hypothetical protein; SP187300_0117 0.0 Click
13complement(1044042..1044233) PHAGE_Strept_MM1: hypothetical protein MM1p05; SP187300_0116; phage(gi15088748) 7e-26 Click
14complement(1044523..1044654) hypothetical protein; SP187300_0115 0.0 Click
151044951..1045319 PHAGE_Strept_PH10: hypothetical protein PH10_gp04; SP187300_0114; phage(gi238821321) 2e-35 Click
161045319..1045552 conserved hypothetical protein; SP187300_0113 0.0 Click
171045552..1045815 PHAGE_Mycoba_Fruitloop: gp41; SP187300_0112; phage(gi206599921) 3e-07 Click
181045828..1046208 PHAGE_Strept_PH10: hypothetical protein PH10_gp03; SP187300_0111; phage(gi238821320) 5e-38 Click
191046225..1047295 prophage Lp2 protein 6; SP187300_0110 0.0 Click
201047350..1048492 PHAGE_Strept_MM1: integrase; SP187300_0109; phage(gi15088744) 1e-88 Click
21complement(1048701..1049168) PHAGE_Microm_MpV1: hypothetical protein; SP187300_0108; phage(gi313768407) 2e-07 Click
221049683..1049694 attL    TTTTTATAATTG 0.0 Click
231049740..1049919 PHAGE_Strept_PH10: hypothetical protein PH10_gp52; SP187300_0107; phage(gi238821369) 4e-25 Click
24complement(1050057..1051013) PHAGE_Strept_MM1: N-acetylmuramoyl-L-alanine amidase; SP187300_0106; phage(gi15088793) 0.0 Click
25complement(1051017..1051349) PHAGE_Strept_MM1: putative holin 2; SP187300_0105; phage(gi15088792) 3e-53 Click
26complement(1051353..1051769) PHAGE_Strept_MM1: putative holin 1; SP187300_0104; phage(gi15088791) 4e-69 Click
27complement(1051779..1052129) PHAGE_Strept_SMP: hypothetical protein; SP187300_0103; phage(gi119953750) 8e-44 Click
28complement(1052132..1052335) PHAGE_Strept_PH10: hypothetical protein PH10_gp47; SP187300_0102; phage(gi238821364) 4e-27 Click
29complement(1052316..1052432) PHAGE_Strept_PH10: hypothetical protein PH10_gp46; SP187300_0101; phage(gi238821363) 1e-09 Click
30complement(1052429..1060393) PHAGE_Strept_PH10: hypothetical protein PH10_gp46; SP187300_0100; phage(gi238821363) 0.0 Click
31complement(1060484..1061206) PHAGE_Strept_PH10: hypothetical protein PH10_gp45; SP187300_0099; phage(gi238821362) 1e-93 Click
32complement(1061203..1063941) PHAGE_Strept_PH10: hypothetical protein PH10_gp44; SP187300_0098; phage(gi238821361) 0.0 Click
33complement(1063961..1064089) conserved hypothetical protein; SP187300_0097 0.0 Click
34complement(1064128..1064604) conserved hypothetical protein; SP187300_0096 0.0 Click
35complement(1064606..1065274) PHAGE_Lactoc_c2: major tail shaft protein; SP187300_0095; phage(gi9628689) 6e-09 Click
36complement(1065288..1065611) PHAGE_Strept_PH10: hypothetical protein PH10_gp40; SP187300_0094; phage(gi238821357) 2e-10 Click
37complement(1065619..1065966) conserved hypothetical protein; SP187300_0093 0.0 Click
38complement(1065966..1066271) putative phage head-tail adaptor; SP187300_0092 0.0 Click
39complement(1066268..1066603) conserved hypothetical protein; SP187300_0091 0.0 Click
40complement(1066629..1067882) PHAGE_Lactoc_Q54: major capsid protein; SP187300_0090; phage(gi115304291) 1e-11 Click
41complement(1067896..1068438) PHAGE_Entero_phiP27: putative prohead protease; SP187300_0089; phage(gi18249903) 2e-15 Click
42complement(1068485..1069627) PHAGE_Lactoc_712: putative portal protein; SP187300_0088; phage(gi115315577) 1e-23 Click
43complement(1069636..1071348) PHAGE_Leucon_Lmd1: putative terminase large subunit; SP187300_0087; phage(gi399528546) 3e-65 Click
44complement(1071341..1071820) conserved hypothetical protein; SP187300_0086 0.0 Click
45complement(1072710..1073252) PHAGE_Strept_PH10: hypothetical protein PH10_gp28; SP187300_0084; phage(gi238821345) 5e-63 Click
46complement(1073361..1073825) PHAGE_Strept_PH10: hypothetical protein PH10_gp27; SP187300_0083; phage(gi238821344) 2e-07 Click
47complement(1074455..1074628) PHAGE_Strept_MM1: hypothetical protein MM1p25; SP187300_0081; phage(gi15088766) 4e-24 Click
48complement(1074628..1074768) PHAGE_Strept_MM1: hypothetical protein MM1p24; SP187300_0080; phage(gi15088765) 2e-17 Click
49complement(1074915..1075439) PHAGE_Strept_1: hypothetical protein EJ-1p26; SP187300_0079; phage(gi39653700) 2e-33 Click
50complement(1075441..1075755) PHAGE_Strept_MM1: hypothetical protein MM1p22; SP187300_0078; phage(gi15088763) 4e-57 Click
51complement(1075926..1076093) hypothetical protein; SP187300_0077 0.0 Click
52complement(1076123..1076446) PHAGE_Strept_PH10: hypothetical protein PH10_gp15; SP187300_0076; phage(gi238821332) 1e-15 Click
53complement(1076446..1076640) PHAGE_Strept_PH10: hypothetical protein PH10_gp12; SP187300_0075; phage(gi238821329) 7e-19 Click
54complement(1076655..1077425) PHAGE_Strept_SM1: gp21; SP187300_0074; phage(gi32469452) 2e-123 Click
55complement(1077419..1077577) PHAGE_Strept_SM1: gp20; SP187300_0073; phage(gi32469451) 5e-13 Click
56complement(1077565..1078401) PHAGE_Strept_SM1: gp19; SP187300_0072; phage(gi32469450) 7e-67 Click
57complement(1078385..1078678) PHAGE_Strept_SM1: gp18; SP187300_0071; phage(gi32469449) 4e-07 Click
58complement(1078694..1079014) PHAGE_Strept_1: hypothetical protein EJ-1p17; SP187300_0070; phage(gi39653691) 2e-39 Click
59complement(1079100..1079357) PHAGE_Strept_PH10: hypothetical protein PH10_gp09; SP187300_0069; phage(gi238821326) 6e-41 Click
60complement(1079370..1080083) PHAGE_Strept_PH10: hypothetical protein PH10_gp08; SP187300_0068; phage(gi238821325) 2e-131 Click
611080138..1080815 PHAGE_Strept_SM1: gp14; SP187300_0066; phage(gi32469445) 1e-123 Click
62complement(1080778..1080906) PHAGE_Strept_SM1: gp13; SP187300_0067; phage(gi32469444) 3e-15 Click
63complement(1080918..1081052) hypothetical protein; SP187300_0065 0.0 Click
64complement(1081123..1081329) PHAGE_Staphy_29: ORF049; SP187300_0064; phage(gi66396236) 1e-10 Click
651081350..1081361 attR    TTTTTATAATTG 0.0 Click
661081435..1081446 attR    TTTTTTATTTTT 0.0 Click
671081503..1082258 PHAGE_Strept_2: putative repressor protein; SP187300_0063; phage(gi28876261) 5e-88 Click
681082271..1083185 PHAGE_Strept_SM1: gp2; SP187300_0062; phage(gi32469433) 3e-46 Click
691083356..1084504 PHAGE_Strept_PH10: hypothetical protein PH10_gp01; SP187300_0061; phage(gi238821318) 0.0 Click
70complement(1084746..1086074) PHAGE_Megavi_lba: adenylosuccinate synthetase; SP187300_0060; phage(gi448826112) 5e-72 Click
71complement(1086263..1086499) conserved hypothetical protein; SP187300_0059 0.0 Click
72complement(1087553..1087687) hypothetical protein; SP187300_0056 0.0 Click
731088695..1089234 PHAGE_Entero_phiFL4A: hypothetical protein; SP187300_0221; phage(gi281416436) 1e-15 Click
741089383..1089394 attR    AAAATCCATAAT 0.0 Click
751090467..1091633 PHAGE_Lactoc_bIL310: integrase; SP187300_0222; phage(gi13095863) 2e-77 Click
761094284..1094295 attR    GTTTTTTAAAAA 0.0 Click

Region 2, total : 36 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11920037..1920048 attL    GCTAAAAAAGTC 0.0 Click
2complement(1928701..1929423) PHAGE_Strept_PH10: hypothetical protein PH10_gp45; SP187300_0052; phage(gi238821362) 1e-93 Click
3complement(1929420..1932158) PHAGE_Strept_PH10: hypothetical protein PH10_gp44; SP187300_0051; phage(gi238821361) 0.0 Click
4complement(1932178..1932306) conserved hypothetical protein; SP187300_0050 0.0 Click
5complement(1932345..1932821) conserved hypothetical protein; SP187300_0049 0.0 Click
6complement(1932823..1933491) PHAGE_Lactoc_c2: major tail shaft protein; SP187300_0048; phage(gi9628689) 6e-09 Click
7complement(1933505..1933828) PHAGE_Strept_PH10: hypothetical protein PH10_gp40; SP187300_0047; phage(gi238821357) 2e-10 Click
8complement(1933836..1934183) conserved hypothetical protein; SP187300_0046 0.0 Click
9complement(1934183..1934488) putative phage head-tail adaptor; SP187300_0045 0.0 Click
10complement(1934485..1934820) conserved hypothetical protein; SP187300_0044 0.0 Click
11complement(1934846..1936099) PHAGE_Lactoc_Q54: major capsid protein; SP187300_0043; phage(gi115304291) 1e-11 Click
12complement(1936113..1936655) PHAGE_Entero_phiP27: putative prohead protease; SP187300_0042; phage(gi18249903) 2e-15 Click
13complement(1936702..1937844) PHAGE_Lactoc_712: putative portal protein; SP187300_0041; phage(gi115315577) 1e-23 Click
14complement(1937853..1939565) PHAGE_Leucon_Lmd1: putative terminase large subunit; SP187300_0040; phage(gi399528546) 3e-65 Click
15complement(1939558..1940037) conserved hypothetical protein; SP187300_0039 0.0 Click
16complement(1940927..1941469) PHAGE_Strept_PH10: hypothetical protein PH10_gp28; SP187300_0037; phage(gi238821345) 5e-63 Click
17complement(1941578..1942042) PHAGE_Strept_PH10: hypothetical protein PH10_gp27; SP187300_0036; phage(gi238821344) 2e-07 Click
18complement(1942672..1942845) PHAGE_Strept_MM1: hypothetical protein MM1p25; SP187300_0034; phage(gi15088766) 4e-24 Click
19complement(1942845..1942985) PHAGE_Strept_MM1: hypothetical protein MM1p24; SP187300_0033; phage(gi15088765) 2e-17 Click
20complement(1943132..1943656) PHAGE_Strept_1: hypothetical protein EJ-1p26; SP187300_0032; phage(gi39653700) 2e-33 Click
21complement(1943658..1943972) PHAGE_Strept_MM1: hypothetical protein MM1p22; SP187300_0031; phage(gi15088763) 4e-57 Click
22complement(1944143..1944310) hypothetical protein; SP187300_0030 0.0 Click
23complement(1944340..1944663) PHAGE_Strept_PH10: hypothetical protein PH10_gp15; SP187300_0029; phage(gi238821332) 1e-15 Click
24complement(1944663..1944857) PHAGE_Strept_PH10: hypothetical protein PH10_gp12; SP187300_0028; phage(gi238821329) 7e-19 Click
25complement(1944872..1945642) PHAGE_Strept_SM1: gp21; SP187300_0027; phage(gi32469452) 2e-123 Click
26complement(1945636..1945794) PHAGE_Strept_SM1: gp20; SP187300_0026; phage(gi32469451) 5e-13 Click
27complement(1945782..1946618) PHAGE_Strept_SM1: gp19; SP187300_0025; phage(gi32469450) 7e-67 Click
28complement(1946602..1946895) PHAGE_Strept_SM1: gp18; SP187300_0024; phage(gi32469449) 4e-07 Click
29complement(1946911..1947231) PHAGE_Strept_1: hypothetical protein EJ-1p17; SP187300_0023; phage(gi39653691) 2e-39 Click
30complement(1947317..1947574) PHAGE_Strept_PH10: hypothetical protein PH10_gp09; SP187300_0022; phage(gi238821326) 6e-41 Click
31complement(1947587..1948300) PHAGE_Strept_PH10: hypothetical protein PH10_gp08; SP187300_0021; phage(gi238821325) 2e-131 Click
321948355..1949032 PHAGE_Strept_SM1: gp14; SP187300_0019; phage(gi32469445) 1e-123 Click
33complement(1948995..1949123) PHAGE_Strept_SM1: gp13; SP187300_0020; phage(gi32469444) 3e-15 Click
34complement(1949135..1949269) hypothetical protein; SP187300_0018 0.0 Click
35complement(1949340..1949546) PHAGE_Staphy_29: ORF049; SP187300_0017; phage(gi66396236) 1e-10 Click
361950489..1951403 PHAGE_Strept_SM1: gp2; SP187300_0014; phage(gi32469433) 3e-46 Click
371952717..1952728 attR    GCTAAAAAAGTC 0.0 Click
38complement(1952964..1954292) PHAGE_Megavi_lba: adenylosuccinate synthetase; SP187300_0011; phage(gi448826112) 5e-72 Click

Region 3, total : 42 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12020744..2020756 attL    TTTTTATTTTTAT 0.0 Click
22028002..2028967 PHAGE_Achole_L2: integrase; SP187300_0975; phage(gi9626516) 3e-17 Click
32030815..2031153 Spn1, transposase Orf2; SP187300_A0045 0.0 Click
42031985..2031996 attL    TTTGAATTTTTT 0.0 Click
52032251..2032487 conserved hypothetical protein; SP187300_A0049 0.0 Click
62032676..2034004 PHAGE_Megavi_lba: adenylosuccinate synthetase; SP187300_A0050; phage(gi448826112) 5e-72 Click
7complement(2034246..2035394) PHAGE_Strept_PH10: hypothetical protein PH10_gp01; SP187300_A0051; phage(gi238821318) 0.0 Click
82035562..2035573 attL    TTTTTATTTTTT 0.0 Click
9complement(2035565..2036479) PHAGE_Strept_SM1: gp2; SP187300_A0052; phage(gi32469433) 3e-46 Click
10complement(2036492..2037247) PHAGE_Strept_2: putative repressor protein; SP187300_A0053; phage(gi28876261) 5e-88 Click
112037421..2037627 PHAGE_Staphy_29: ORF049; SP187300_A0054; phage(gi66396236) 1e-10 Click
122037698..2037832 hypothetical protein; SP187300_A0055 0.0 Click
132037844..2037972 PHAGE_Strept_SM1: gp13; SP187300_A0057; phage(gi32469444) 3e-15 Click
14complement(2037935..2038612) PHAGE_Strept_SM1: gp14; SP187300_A0056; phage(gi32469445) 1e-123 Click
152038667..2039380 PHAGE_Strept_PH10: hypothetical protein PH10_gp08; SP187300_A0058; phage(gi238821325) 2e-131 Click
162039393..2039650 PHAGE_Strept_PH10: hypothetical protein PH10_gp09; SP187300_A0059; phage(gi238821326) 6e-41 Click
172039736..2040056 PHAGE_Strept_1: hypothetical protein EJ-1p17; SP187300_A0060; phage(gi39653691) 2e-39 Click
182040072..2040365 PHAGE_Strept_SM1: gp18; SP187300_A0061; phage(gi32469449) 4e-07 Click
192040349..2041185 PHAGE_Strept_SM1: gp19; SP187300_A0062; phage(gi32469450) 7e-67 Click
202041173..2041331 PHAGE_Strept_SM1: gp20; SP187300_A0063; phage(gi32469451) 5e-13 Click
212041337..2042095 PHAGE_Strept_SM1: gp21; SP187300_A0064; phage(gi32469452) 2e-122 Click
222042110..2042304 PHAGE_Strept_PH10: hypothetical protein PH10_gp12; SP187300_A0065; phage(gi238821329) 7e-19 Click
232042304..2042627 PHAGE_Strept_PH10: hypothetical protein PH10_gp15; SP187300_A0066; phage(gi238821332) 1e-15 Click
242042657..2042824 hypothetical protein; SP187300_A0067 0.0 Click
252042811..2043020 hypothetical protein; SP187300_A0068 0.0 Click
262042995..2043309 PHAGE_Strept_MM1: hypothetical protein MM1p22; SP187300_A0069; phage(gi15088763) 4e-57 Click
272043311..2043835 PHAGE_Strept_1: hypothetical protein EJ-1p26; SP187300_A0070; phage(gi39653700) 2e-33 Click
282043835..2044122 PHAGE_Strept_MM1: hypothetical protein MM1p24; SP187300_A0071; phage(gi15088765) 3e-44 Click
292044122..2044295 PHAGE_Strept_MM1: hypothetical protein MM1p25; SP187300_A0072; phage(gi15088766) 4e-24 Click
302044925..2045389 PHAGE_Strept_PH10: hypothetical protein PH10_gp27; SP187300_A0075; phage(gi238821344) 2e-07 Click
312045498..2046040 PHAGE_Strept_PH10: hypothetical protein PH10_gp28; SP187300_A0076; phage(gi238821345) 5e-63 Click
322046789..2046800 attR    TTTTTATTTTTT 0.0 Click
332046798..2046809 attR    TTTGAATTTTTT 0.0 Click
342046805..2046817 attR    TTTTTATTTTTAT 0.0 Click
352046930..2047409 conserved hypothetical protein; SP187300_A0078 0.0 Click
362047402..2049114 PHAGE_Leucon_Lmd1: putative terminase large subunit; SP187300_A0079; phage(gi399528546) 3e-65 Click
372049339..2050265 PHAGE_Lactoc_712: putative portal protein; SP187300_A0080; phage(gi115315577) 2e-16 Click
382050312..2050854 PHAGE_Entero_phiP27: putative prohead protease; SP187300_A0081; phage(gi18249903) 2e-15 Click
392050841..2052121 PHAGE_Lactoc_Q54: major capsid protein; SP187300_A0082; phage(gi115304291) 1e-11 Click
402052147..2052482 conserved hypothetical protein; SP187300_A0083 0.0 Click
412052479..2052784 putative phage head-tail adaptor; SP187300_A0084 0.0 Click
422052784..2053131 conserved hypothetical protein; SP187300_A0085 0.0 Click
432053118..2053462 PHAGE_Strept_PH10: hypothetical protein PH10_gp40; SP187300_A0086; phage(gi238821357) 2e-10 Click
442053476..2054144 PHAGE_Lactoc_c2: major tail shaft protein; SP187300_A0087; phage(gi9628689) 6e-09 Click
452054146..2054622 conserved hypothetical protein; SP187300_A0088 0.0 Click
462054661..2054789 conserved hypothetical protein; SP187300_A0089 0.0 Click
472054809..2057547 PHAGE_Strept_PH10: hypothetical protein PH10_gp44; SP187300_A0090; phage(gi238821361) 0.0 Click
482057544..2058266 PHAGE_Strept_PH10: hypothetical protein PH10_gp45; SP187300_A0091; phage(gi238821362) 1e-93 Click

Region 4, total : 18 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12202427..2202438 attL    AAAAAGCCCCAC 0.0 Click
2complement(2203683..2204255) PHAGE_Lactoc_bIL311: Orf14; SP187300_0208; phage(gi13095672) 1e-08 Click
3complement(2204274..2204528) conserved hypothetical protein; SP187300_0209 0.0 Click
4complement(2204823..2205278) PHAGE_Strept_PH10: hypothetical protein PH10_gp27; SP187300_0210; phage(gi238821344) 1e-08 Click
5complement(2205279..2206124) PHAGE_Strept_1: DnaC protein; SP187300_0211; phage(gi39653686) 6e-35 Click
6complement(2206136..2206999) PHAGE_Strept_phi3396: putative replication protein; SP187300_0212; phage(gi126011075) 1e-62 Click
7complement(2206986..2207267) PHAGE_Lactoc_bIL310: hypothetical protein bIL310p19; SP187300_0213; phage(gi13095880) 4e-08 Click
8complement(2207609..2207875) conserved hypothetical protein; SP187300_0214 0.0 Click
9complement(2207872..2208087) hypothetical protein; SP187300_0215 0.0 Click
10complement(2208089..2208289) conserved hypothetical protein; SP187300_0216 0.0 Click
11complement(2208286..2208738) PHAGE_Strept_6: hypothetical protein SpyM3_1449; SP187300_0217; phage(gi28876479) 5e-15 Click
12complement(2209050..2209310) conserved hypothetical protein; SP187300_0218 0.0 Click
13complement(2209322..2209924) PHAGE_Lactoc_bIL311: Orf3; SP187300_0219; phage(gi13095661) 9e-25 Click
14complement(2211596..2212414) PHAGE_Lactoc_Q54: putative HAD hydrolase; SP187300_1318; phage(gi115304277) 1e-07 Click
15complement(2212414..2213208) Cof family protein; SP187300_1319 0.0 Click
16complement(2213205..2216744) PHAGE_Glossi_virus: hypothetical protein SGHV062; SP187300_1320; phage(gi168804078) 1e-22 Click
17complement(2216735..2217433) PHAGE_Acanth_moumouvirus: ribonuclease III; SP187300_1321; phage(gi441432411) 2e-27 Click
18complement(2217612..2217688) tRNA 0.0 Click
192218292..2218831 PHAGE_Entero_phiFL4A: hypothetical protein; SP187300_2213; phage(gi281416436) 1e-15 Click
202219679..2219690 attR    AAAAAGCCCCAC 0.0 Click
212220057..2221223 PHAGE_Lactoc_bIL311: integrase; SP187300_2214; phage(gi13095659) 2e-59 Click