Clostridium perfringens CPE str. F4969 , whole [asmbl_id: NC_000000].3510272, GC%: 28.57%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11296200..1296215 attL    TTTATATATATTTTTT 0.0 Click
2complement(1297275..1299044) PHAGE_Cafete_BV_PW1: putative helicase/exonuclease; AC5_0187; phage(gi310831493) 5e-16 Click
3complement(1299322..1299792) PHAGE_Hypert_2: IS element Dka2 orfA; AC5_0186; phage(gi300116744) 1e-11 Click
4complement(1300143..1300943) PHAGE_Staphy_X2: ORF015; AC5_0185; phage(gi66394685) 1e-37 Click
5complement(1301264..1302817) PHAGE_Bacill_WBeta: putative site-specific recombinase; AC5_0184; phage(gi85701406) 2e-21 Click
6complement(1302817..1303008) hypothetical protein; AC5_0183 0.0 Click
7complement(1303190..1303876) PHAGE_Acinet_Bphi_B1251: hypothetical protein; AC5_0182; phage(gi423262020) 5e-09 Click
8complement(1303888..1304034) hypothetical protein; AC5_0181 0.0 Click
9complement(1304379..1305161) PHAGE_Bacill_phBC6A52: prohead protease; AC5_0180; phage(gi31415851) 3e-06 Click
101308351..1308366 attR    TTTATATATATTTTTT 0.0 Click

Region 2, total : 91 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12599674..2599688 attL    TTATATTTTAACATA 0.0 Click
2complement(2614589..2617567) PHAGE_Clostr_phi3626: Gp15 protein; AC5_1690; phage(gi20065978) 0.0 Click
3complement(2617564..2618280) PHAGE_Clostr_phiCP34O: putative phage tail component; AC5_1691; phage(gi422935447) 3e-11 Click
4complement(2618273..2621074) PHAGE_Clostr_phiCD38_2: tail tape measure; AC5_1692; phage(gi333798123) 1e-63 Click
5complement(2621325..2621828) PHAGE_Swinep_virus: SPV130 DNA ligase-like ptorein; AC5_1693; phage(gi18640216) 3e-05 Click
6complement(2621874..2622488) PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_1694; phage(gi333798121) 3e-54 Click
7complement(2622488..2622865) PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_1695; phage(gi333798120) 3e-10 Click
8complement(2622885..2623376) PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_1696; phage(gi333798119) 3e-29 Click
9complement(2623382..2623813) PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_1697; phage(gi333798118) 5e-39 Click
10complement(2623810..2624163) PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_1698; phage(gi333798117) 8e-23 Click
11complement(2624166..2624573) PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_1699; phage(gi333798116) 1e-22 Click
12complement(2624573..2624911) conserved hypothetical protein; AC5_1700 0.0 Click
13complement(2624962..2625987) PHAGE_Entero_phiEf11: putative head protein; AC5_1701; phage(gi282598750) 6e-64 Click
14complement(2626004..2626336) PHAGE_Entero_phiEf11: conserved hypothetical protein; AC5_1702; phage(gi282598728) 1e-10 Click
15complement(2626361..2626993) PHAGE_Staphy_96: ORF019; AC5_1703; phage(gi66395904) 8e-16 Click
16complement(2627029..2627907) hypothetical protein; AC5_1704 0.0 Click
17complement(2628034..2628798) PHAGE_Clostr_CD119: putative head protein; AC5_1705; phage(gi90592642) 2e-16 Click
18complement(2628791..2630125) PHAGE_Clostr_phi8074_B1: putative phage portal protein; AC5_1706; phage(gi431810361) 1e-31 Click
19complement(2630139..2631887) PHAGE_Haemop_SuMu: terminase; AC5_1707; phage(gi418489081) 3e-15 Click
20complement(2632283..2632675) PHAGE_Thermo_THSA_485A: hypothetical protein; AC5_1708; phage(gi397912640) 7e-08 Click
21complement(2632994..2633449) PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; AC5_1709; phage(gi90592709) 2e-20 Click
22complement(2633456..2633605) hypothetical protein; AC5_1710 0.0 Click
23complement(2633602..2633811) hypothetical protein; AC5_1711 0.0 Click
24complement(2634104..2636368) PHAGE_Lactob_phiadh: putative DNA-polymerase or DNA-primase; AC5_1712; phage(gi9633023) 2e-80 Click
25complement(2636417..2636632) PHAGE_Bacill_Bastille: hypothetical protein; AC5_1713; phage(gi410492363) 9e-11 Click
26complement(2637577..2637723) hypothetical protein; AC5_1716 0.0 Click
27complement(2637723..2638094) hypothetical protein; AC5_1717 0.0 Click
28complement(2638108..2638398) conserved hypothetical protein; AC5_1718 0.0 Click
29complement(2638401..2639036) PHAGE_Clostr_phiCP13O: hypothetical protein; AC5_1719; phage(gi422935104) 2e-41 Click
30complement(2639072..2639602) PHAGE_Rhodot_RM378: putative translation initiation factor; AC5_1720; phage(gi30044008) 3e-11 Click
31complement(2639602..2640087) PHAGE_Clostr_O: Gp157; AC5_1721; phage(gi208429902) 2e-31 Click
32complement(2640089..2640574) hypothetical protein; AC5_1722 0.0 Click
33complement(2640688..2641119) hypothetical protein; AC5_1723 0.0 Click
34complement(2641103..2641489) PHAGE_Clostr_phiCP34O: single-strand binding protein; AC5_1724; phage(gi422935470) 2e-35 Click
35complement(2641501..2641767) PHAGE_Entero_EcP1: hypothetical protein; AC5_1725; phage(gi418489321) 2e-08 Click
36complement(2642589..2642948) PHAGE_Clostr_phiCD38_2: replication terminator protein; AC5_1728; phage(gi333798149) 2e-13 Click
37complement(2642960..2643127) hypothetical protein; AC5_1729 0.0 Click
38complement(2643141..2643326) hypothetical protein; AC5_1730 0.0 Click
39complement(2643574..2643852) hypothetical protein; AC5_1731 0.0 Click
402643964..2644194 hypothetical protein; AC5_1733 0.0 Click
41complement(2644174..2644419) hypothetical protein; AC5_1732 0.0 Click
42complement(2644397..2644552) hypothetical protein; AC5_1734 0.0 Click
43complement(2644546..2644701) hypothetical protein; AC5_1735 0.0 Click
442644900..2645259 PHAGE_Clostr_phiCD38_2: CI phage repressor; AC5_1736; phage(gi333798146) 8e-14 Click
45complement(2645274..2645396) hypothetical protein; AC5_1737 0.0 Click
462646315..2646530 PHAGE_Clostr_phi3626: endolysin; AC5_0835; phage(gi20065983) 8e-30 Click
47complement(2646588..2647022) PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0836; phage(gi110804024) 1e-60 Click
482647153..2647473 hypothetical protein; AC5_0837 0.0 Click
49complement(2647495..2647701) hypothetical protein; AC5_0838 0.0 Click
50complement(2647703..2647837) hypothetical protein; AC5_0839 0.0 Click
51complement(2647905..2648318) hypothetical protein; AC5_0840 0.0 Click
52complement(2648309..2649214) PHAGE_Clostr_phiSM101: putative ATPase; AC5_0841; phage(gi110804060) 6e-20 Click
532649695..2650429 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0842; phage(gi110804037) 2e-46 Click
542650893..2651015 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0844; phage(gi110804044) 2e-07 Click
55complement(2651012..2651383) PHAGE_Clostr_phiCD38_2: CI phage repressor; AC5_0843; phage(gi333798146) 1e-13 Click
562651564..2651737 hypothetical protein; AC5_0845 0.0 Click
572651808..2652491 PHAGE_Staphy_phiETA: similar to phage r1t ORF11; AC5_0846; phage(gi17426250) 6e-45 Click
582652500..2653786 PHAGE_Clostr_phi3626: putative helicase; AC5_0847; phage(gi20065998) 0.0 Click
592653796..2654215 PHAGE_Clostr_phi3626: putative single stranded DNA binding protein; AC5_0848; phage(gi20066002) 2e-64 Click
602654245..2654538 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0849; phage(gi110804047) 6e-26 Click
612654838..2655602 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp64; AC5_0850; phage(gi90592700) 4e-77 Click
622655617..2656009 hypothetical protein; AC5_0851 0.0 Click
632656025..2656348 possible sigma factor; AC5_0852 0.0 Click
642656526..2657056 conserved hypothetical protein; AC5_0853 0.0 Click
652657171..2657264 tRNA 0.0 Click
662657358..2658020 PHAGE_Clostr_phiCD38_2: integrase; AC5_0855; phage(gi333798160) 5e-29 Click
672658497..2659087 PHAGE_Escher_D108: G region invertase; AC5_0856; phage(gi281199698) 2e-17 Click
682659135..2659875 PHAGE_Clostr_phiCD38_2: terminase small subunit; AC5_0857; phage(gi333798108) 4e-51 Click
692659847..2661178 PHAGE_Clostr_phiCD38_2: terminase large subunit; AC5_0858; phage(gi333798109) 1e-168 Click
702661384..2662757 PHAGE_Clostr_phiCD38_2: minor capsid protein; AC5_0859; phage(gi333798110) 3e-133 Click
712662759..2664612 PHAGE_Clostr_phiCD38_2: minor capsid protein; AC5_0860; phage(gi333798111) 2e-105 Click
722664618..2664974 conserved hypothetical protein; AC5_0861 0.0 Click
732665030..2665635 PHAGE_Clostr_phiCTP1: putative scaffold protein; AC5_0862; phage(gi304360672) 2e-21 Click
742665663..2666748 PHAGE_Clostr_phiCD38_2: phage coat protein; AC5_0863; phage(gi333798114) 1e-122 Click
752666753..2667097 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0864; phage(gi333798115) 2e-16 Click
762667098..2667523 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0865; phage(gi333798116) 2e-22 Click
772667523..2667870 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0866; phage(gi333798117) 1e-21 Click
782667870..2668307 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0867; phage(gi333798118) 1e-38 Click
792668313..2668819 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0868; phage(gi333798119) 1e-30 Click
802668819..2669193 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0869; phage(gi333798120) 1e-10 Click
812669193..2669804 PHAGE_Clostr_phiCD38_2: hypothetical protein; AC5_0870; phage(gi333798121) 9e-55 Click
822669852..2670403 hypothetical protein; AC5_0871 0.0 Click
832670668..2674636 PHAGE_Strept_6: putative tail protein; AC5_0872; phage(gi28876451) 4e-60 Click
842674639..2675340 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0873; phage(gi110804045) 7e-56 Click
852675321..2675659 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0874; phage(gi110804063) 6e-47 Click
862675869..2676327 hypothetical protein; AC5_0875 0.0 Click
872676385..2676624 hypothetical protein; AC5_0876 0.0 Click
882676639..2683865 PHAGE_Clostr_phiCTP1: hypothetical phage structural protein; AC5_0877; phage(gi304360688) 2e-73 Click
892683882..2684130 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0878; phage(gi110804071) 7e-42 Click
902684148..2684465 PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; AC5_0879; phage(gi399498883) 2e-09 Click
912684465..2684716 PHAGE_Clostr_CD119: putative holin; AC5_0880; phage(gi90592670) 1e-18 Click
922684736..2685152 PHAGE_Clostr_phiSM101: hypothetical protein; AC5_0881; phage(gi110804061) 4e-20 Click
932685269..2686324 PHAGE_Clostr_phi3626: endolysin; AC5_0882; phage(gi20065983) 4e-58 Click
942687728..2687742 attR    TTATATTTTAACATA 0.0 Click

Region 3, total : 20 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12704629..2704640 attL    CACCTCTTTTTT 0.0 Click
2complement(2708453..2710978) PHAGE_Lactob_c5: putative antireceptor; AC5_1423; phage(gi418488169) 1e-39 Click
3complement(2710975..2711676) PHAGE_Clostr_phiCD38_2: tail component protein; AC5_1424; phage(gi333798124) 2e-21 Click
4complement(2711673..2714474) PHAGE_Clostr_phiCD38_2: tail tape measure; AC5_1425; phage(gi333798123) 1e-71 Click
5complement(2714516..2714671) hypothetical protein; AC5_1426 0.0 Click
6complement(2714719..2715057) hypothetical protein; AC5_1427 0.0 Click
7complement(2715114..2715674) PHAGE_Clostr_phiCD6356: putative phage major tail protein; AC5_1428; phage(gi326536858) 1e-10 Click
8complement(2715655..2716017) hypothetical protein; AC5_1429 0.0 Click
9complement(2716014..2716433) hypothetical protein; AC5_1430 0.0 Click
10complement(2716426..2716755) putative phage head-tail adaptor; AC5_1431 0.0 Click
11complement(2716752..2717030) PHAGE_Lactob_c5: hypothetical protein; AC5_1432; phage(gi418488160) 4e-07 Click
12complement(2717074..2718246) PHAGE_Lactob_c5: putative major head protein; AC5_1433; phage(gi418488201) 1e-25 Click
13complement(2718261..2718845) PHAGE_Lactob_c5: putative ClpP protease; AC5_1434; phage(gi418488200) 5e-33 Click
14complement(2718820..2720052) PHAGE_Lactob_c5: putative portal protein; AC5_1435; phage(gi418488158) 2e-76 Click
15complement(2720068..2721753) PHAGE_Lactob_c5: putative terminase large subunit; AC5_1436; phage(gi418488157) 6e-104 Click
16complement(2721750..2722214) PHAGE_Geobac_E2: putative terminase small subunit; AC5_1437; phage(gi148747728) 1e-06 Click
17complement(2722214..2722387) hypothetical protein; AC5_1438 0.0 Click
18complement(2722503..2722916) PHAGE_Lactob_c5: hypothetical protein; AC5_1439; phage(gi418488199) 1e-15 Click
19complement(2722933..2723190) hypothetical protein; AC5_1440 0.0 Click
20complement(2723205..2723684) PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_28; AC5_1441; phage(gi13487829) 3e-12 Click
212723690..2723701 attR    CACCTCTTTTTT 0.0 Click
22complement(2723966..2724604) PHAGE_Clostr_phiCD38_2: integrase; AC5_1442; phage(gi333798160) 1e-29 Click