Haemophilus influenzae R3021 whole genome shotgun sequence. [asmbl_id: NC_000000].1875614, GC%: 37.96%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 24 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(890401..891411) PHAGE_Mannhe_phiMHaA1: capsid portal protein Q; CGSHi22421_02901; phage(gi109289937) 2e-120 Click
2complement(891421..893202) PHAGE_Mannhe_phiMHaA1: terminase ATPase subunit; CGSHi22421_02906; phage(gi109289938) 0.0 Click
3893367..894182 PHAGE_Mannhe_phiMHaA1: capsid scaffolding protein O; CGSHi22421_02911; phage(gi109289939) 2e-73 Click
4894203..895252 PHAGE_Mannhe_phiMHaA1: major capsid protein N; CGSHi22421_02916; phage(gi109289940) 3e-91 Click
5895264..895914 PHAGE_Mannhe_phiMHaA1: terminase small subunit; CGSHi22421_02921; phage(gi109289941) 6e-47 Click
6896208..896714 PHAGE_Mannhe_phiMHaA1: head completion protein L; CGSHi22421_02926; phage(gi109289942) 4e-35 Click
7896714..896923 PHAGE_Mannhe_phiMHaA1: tail synthesis protein X; CGSHi22421_02931; phage(gi109289943) 2e-12 Click
8896925..897146 PHAGE_Mannhe_phiMHaA1: possible holin; CGSHi22421_02936; phage(gi109289944) 2e-05 Click
9897139..897657 PHAGE_Mannhe_phiMHaA1: endolysin; CGSHi22421_02941; phage(gi109289945) 2e-38 Click
10897642..897992 hypothetical protein; CGSHi22421_02946 0.0 Click
11898206..898382 PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; CGSHi22421_02951; phage(gi109289947) 8e-09 Click
12898379..898849 PROPHAGE_Salmon_Ty2: putative phage tail protein; CGSHi22421_02956; phage(gi29143748) 4e-31 Click
13898849..899307 PHAGE_Mannhe_phiMHaA1: tail synthesis protein S; CGSHi22421_02961; phage(gi109289949) 5e-28 Click
14complement(899285..899557) hypothetical protein; CGSHi22421_02966 0.0 Click
15899657..899833 PHAGE_Mannhe_phiMHaA1: tail synthesis protein S; CGSHi22421_02971; phage(gi109289949) 6e-06 Click
16complement(899834..900181) hypothetical protein; CGSHi22421_02976 0.0 Click
17900254..902911 PHAGE_Mannhe_phiMHaA1: tail protein T; CGSHi22421_02981; phage(gi109289951) 6e-171 Click
18903079..903570 hypothetical protein; CGSHi22421_02986 0.0 Click
19903579..904007 hypothetical protein; CGSHi22421_02991 0.0 Click
20904111..904710 PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; CGSHi22421_02996; phage(gi109289954) 4e-63 Click
21904712..905035 PHAGE_Mannhe_phiMHaA1: baseplate assembly protein W; CGSHi22421_03001; phage(gi109289955) 5e-21 Click
22905046..905960 PHAGE_Mannhe_phiMHaA1: baseplate assembly protein J; CGSHi22421_03006; phage(gi109289956) 1e-96 Click
23905947..906486 PHAGE_Mannhe_phiMHaA1: tail formation protein I; CGSHi22421_03011; phage(gi109289957) 2e-50 Click
24906495..907719 PHAGE_Mannhe_phiMHaA1: variable tail fiber protein H; CGSHi22421_03016; phage(gi109289958) 1e-41 Click

Region 2, total : 13 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1963456..963467 attL    ACCGCACTTTTT 0.0 Click
2973104..974198 PHAGE_Ostreo_2: putative acetolactate synthase large subunit; CGSHi22421_03863; phage(gi314055125) 8e-32 Click
3974188..974826 PHAGE_Microm_MpV1: hypothetical protein; CGSHi22421_03868; phage(gi313768236) 2e-17 Click
4974826..975317 acetolactate synthase 3 regulatory subunit; CGSHi22421_03873 0.0 Click
5complement(975609..976574) PHAGE_Acanth_moumouvirus: arginyl-tRNA synthetase; CGSHi22421_03878; phage(gi441432642) 8e-44 Click
6complement(976561..977343) PHAGE_Megavi_lba: arginyl-tRNA synthetase; CGSHi22421_03883; phage(gi448825801) 5e-32 Click
7977423..977992 hypothetical protein; CGSHi22421_03888 0.0 Click
8978042..978293 hypothetical lipoprotein; CGSHi22421_03893 0.0 Click
9978319..978783 PHAGE_Lactoc_lato: putative tail lysin; CGSHi22421_03898; phage(gi30089904) 6e-05 Click
10complement(978970..979941) PHAGE_Staphy_phiN315: probable ss-1,3-N-acetylglucosaminyltransferase; CGSHi22421_03903; phage(gi30043988) 7e-06 Click
11complement(980259..980357) hypothetical protein; CGSHi22421_03908 0.0 Click
12complement(980592..982241) glucose-6-phosphate isomerase; CGSHi22421_03913 0.0 Click
13complement(982338..983420) alanine racemase; CGSHi22421_03918 0.0 Click
14complement(983430..984836) PHAGE_Entero_P1: Ban; CGSHi22421_03923; phage(gi46401697) 9e-173 Click
15complement(984978..986414) pyruvate kinase; CGSHi22421_03928 0.0 Click
16986643..986719 tRNA 0.0 Click
17986945..987268 PHAGE_Mannhe_phiMHaA1: integrase; CGSHi22421_03933; phage(gi109289985) 2e-27 Click
18989609..989620 attR    ACCGCACTTTTT 0.0 Click

Region 3, total : 47 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11608900..1609113 PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; CGSHi22421_00857; phage(gi273809589) 6e-23 Click
21609110..1609541 PHAGE_Aggreg_S1249: replication protein; CGSHi22421_00862; phage(gi273809588) 2e-41 Click
31609531..1609833 PHAGE_Aggreg_S1249: replication protein; CGSHi22421_00867; phage(gi273809588) 4e-17 Click
41609830..1610450 PHAGE_Stx2_c_I: P protein; CGSHi22421_00872; phage(gi20065922) 6e-16 Click
51610447..1610671 hypothetical protein; CGSHi22421_00877 0.0 Click
61610708..1611127 PHAGE_Aggreg_S1249: putative recombination protein NinB; CGSHi22421_00882; phage(gi273809585) 5e-57 Click
71611124..1611216 hypothetical protein; CGSHi22421_00887 0.0 Click
81611216..1611614 PHAGE_Aggreg_S1249: NinG recombination protein; CGSHi22421_00892; phage(gi273809581) 1e-21 Click
91611806..1612171 PHAGE_Aggreg_S1249: putative anti-termination protein Q; CGSHi22421_00897; phage(gi273809580) 5e-05 Click
10complement(1612213..1612299) hypothetical protein; CGSHi22421_00902 0.0 Click
111612446..1612895 PHAGE_Burkho_phiE202: gp9, Cpp15; CGSHi22421_00907; phage(gi134288743) 1e-07 Click
121612948..1613268 PHAGE_Burkho_phiE202: gp9, Cpp15; CGSHi22421_00912; phage(gi134288743) 2e-15 Click
131613678..1614190 hypothetical protein; CGSHi22421_00917 0.0 Click
141614320..1614493 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00922; phage(gi273809552) 1e-10 Click
151614689..1614940 Haemophilus-specific protein, uncharacterized; CGSHi22421_00927 0.0 Click
161614921..1615463 PHAGE_Mannhe_phiMHaA1: endolysin; CGSHi22421_00932; phage(gi109289945) 9e-47 Click
171615436..1615771 PHAGE_Aggreg_S1249: putative lytic protein Rz; CGSHi22421_00937; phage(gi273809574) 4e-33 Click
18complement(1615966..1616313) PHAGE_Burkho_phiE125: putative helix-turn-helix transcriptional regulator; CGSHi22421_00942; phage(gi17975230) 1e-05 Click
19complement(1616297..1616548) hypothetical protein; CGSHi22421_00947 0.0 Click
201616626..1617147 PHAGE_Entero_Sf6: gene 1 protein; CGSHi22421_00952; phage(gi41057279) 6e-35 Click
211617122..1618525 PHAGE_Aggreg_S1249: putative terminase large subunit TerL; CGSHi22421_00957; phage(gi273809570) 0.0 Click
221618527..1619231 PHAGE_Aggreg_S1249: phage-related protein HI1409; CGSHi22421_00962; phage(gi273809569) 7e-104 Click
231619294..1619857 PHAGE_Aggreg_S1249: phage-related protein HI1409; CGSHi22421_00967; phage(gi273809569) 1e-83 Click
241619886..1621319 PHAGE_Aggreg_S1249: putative minor head protein; CGSHi22421_00972; phage(gi273809568) 2e-87 Click
251621409..1622512 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00977; phage(gi273809565) 2e-175 Click
261622526..1622975 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00982; phage(gi273809564) 2e-73 Click
271622986..1623828 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00987; phage(gi273809563) 4e-140 Click
281623911..1624273 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00992; phage(gi273809562) 3e-37 Click
291624274..1624786 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00997; phage(gi273809561) 6e-47 Click
301624783..1625154 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01002; phage(gi273809560) 3e-47 Click
311625219..1625581 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01007; phage(gi273809559) 8e-46 Click
321625586..1627094 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01012; phage(gi273809558) 0.0 Click
331627171..1627329 hypothetical protein; CGSHi22421_01017 0.0 Click
341627339..1627770 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01022; phage(gi273809557) 9e-74 Click
351627770..1628180 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01027; phage(gi273809556) 3e-52 Click
361628331..1630421 PHAGE_Aggreg_S1249: putative tail length tape measure protein; CGSHi22421_01032; phage(gi273809555) 0.0 Click
371630427..1631230 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01037; phage(gi273809554) 2e-90 Click
381631253..1631561 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01042; phage(gi273809553) 6e-47 Click
391631652..1631810 hypothetical protein; CGSHi22421_01047 0.0 Click
401631813..1632664 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01052; phage(gi273809551) 6e-138 Click
411632682..1633326 PHAGE_Aggreg_S1249: putative baseplate protein; CGSHi22421_01057; phage(gi273809550) 4e-101 Click
421633323..1633676 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01062; phage(gi273809549) 2e-57 Click
431633747..1634916 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01067; phage(gi273809548) 0.0 Click
441634916..1635491 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_01072; phage(gi273809547) 2e-88 Click
451635502..1636428 PHAGE_Aggreg_S1249: putative tail fiber protein; CGSHi22421_01077; phage(gi273809546) 5e-73 Click
461636429..1636638 elongation factor EF-2; CGSHi22421_05942 0.0 Click
471636703..1637887 PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_05947; phage(gi273809583) 6e-07 Click

Region 4, total : 46 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11770749..1770762 attL    ATTAAAAGTGCGGT 0.0 Click
2complement(1770791..1771678) PHAGE_Thermu_26: phage XerD-like integrase; CGSHi22421_09661; phage(gi157265417) 1e-12 Click
3complement(1771672..1772112) site-specific tyrosine recombinase XerC; CGSHi22421_09666 0.0 Click
41772278..1773069 triosephosphate isomerase; CGSHi22421_09671 0.0 Click
5complement(1773153..1773470) thiosulfate sulfurtransferase GlpE; CGSHi22421_09676 0.0 Click
6complement(1773471..1774349) triosephosphate isomerase; CGSHi22421_09681 0.0 Click
7complement(1774381..1775259) DNA-binding transcriptional regulator IlvY; CGSHi22421_09686 0.0 Click
8complement(1775589..1777366) PHAGE_Mannhe_phiMHaA1: replication protein A; CGSHi22421_00662; phage(gi109289978) 2e-77 Click
9complement(1777379..1777687) hypothetical protein; CGSHi22421_00667 0.0 Click
10complement(1777703..1777816) hypothetical protein; CGSHi22421_00672 0.0 Click
11complement(1777809..1778063) hypothetical protein; CGSHi22421_00677 0.0 Click
12complement(1778060..1778323) hypothetical protein; CGSHi22421_00682 0.0 Click
13complement(1778415..1778732) PHAGE_Haemop_HP2: hypothetical protein HP2p06; CGSHi22421_00687; phage(gi17981821) 4e-06 Click
14complement(1778750..1779013) hypothetical protein; CGSHi22421_00692 0.0 Click
15complement(1779104..1779346) PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p38; CGSHi22421_00697; phage(gi109289973) 3e-23 Click
161779411..1779563 hypothetical protein; CGSHi22421_00702 0.0 Click
17complement(1779470..1779751) PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p37; CGSHi22421_00707; phage(gi109289972) 2e-07 Click
181779794..1780054 hypothetical protein; CGSHi22421_00712 0.0 Click
19complement(1779939..1780442) hypothetical protein; CGSHi22421_00717 0.0 Click
20complement(1780658..1780813) hypothetical protein; CGSHi22421_00722 0.0 Click
211780894..1781187 hypothetical protein; CGSHi22421_00727 0.0 Click
221781222..1781464 hypothetical protein; CGSHi22421_00732 0.0 Click
23complement(1781519..1781743) PHAGE_Salmon_ST160: Cro; CGSHi22421_00737; phage(gi318065926) 2e-14 Click
241781863..1782558 PHAGE_Mannhe_phiMHaA1: CI repressor; CGSHi22421_00742; phage(gi109289970) 2e-36 Click
251782584..1783072 PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p34; CGSHi22421_00747; phage(gi109289969) 2e-35 Click
261783069..1783308 PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p32; CGSHi22421_00752; phage(gi109289967) 1e-10 Click
271783330..1784091 hypothetical protein; CGSHi22421_00757 0.0 Click
281784091..1784333 hypothetical protein; CGSHi22421_00762 0.0 Click
291784336..1786096 PHAGE_Rachip_MNPV: hypothetical protein; CGSHi22421_00767; phage(gi23577825) 2e-06 Click
301786156..1786518 hypothetical protein; CGSHi22421_00772 0.0 Click
31complement(1786562..1786897) PHAGE_Mannhe_phiMHaA1: tail protein D; CGSHi22421_00777; phage(gi109289965) 4e-27 Click
32complement(1786894..1787781) PHAGE_Mannhe_phiMHaA1: tail protein D; CGSHi22421_00782; phage(gi109289965) 4e-98 Click
33complement(1787781..1788218) PHAGE_Mannhe_phiMHaA1: tail protein U; CGSHi22421_00787; phage(gi109289964) 2e-43 Click
34complement(1788386..1788532) PHAGE_Burkho_KS5: gp17; CGSHi22421_00792; phage(gi327198015) 4e-10 Click
35complement(1788532..1788831) PHAGE_Mannhe_phiMHaA1: tail protein E; CGSHi22421_00797; phage(gi109289962) 1e-12 Click
36complement(1788897..1789403) PHAGE_Mannhe_phiMHaA1: tail tube protein FII; CGSHi22421_00802; phage(gi109289961) 5e-54 Click
37complement(1789407..1790591) PHAGE_Salmon_RE_2010: major tail sheath protein; CGSHi22421_00807; phage(gi418489720) 3e-103 Click
38complement(1790734..1790853) hypothetical protein; CGSHi22421_00812 0.0 Click
39complement(1790850..1790993) PHAGE_Haemop_HP2: tail collar; CGSHi22421_00817; phage(gi17981848) 1e-12 Click
40complement(1791200..1791451) PHAGE_Haemop_HP2: tail collar; CGSHi22421_00822; phage(gi17981848) 9e-37 Click
41complement(1791463..1791747) PHAGE_Haemop_HP2: tail fibers; CGSHi22421_00827; phage(gi17981847) 4e-08 Click
421791991..1792113 hypothetical protein; CGSHi22421_07678 0.0 Click
431792325..1792420 putative type I restriction enzyme HindVIIP R protein; CGSHi22421_07683 0.0 Click
44complement(1792353..1792592) putative 5-methylcytosine methyltransferase; CGSHi22421_07688 0.0 Click
45complement(1792785..1794215) PHAGE_Synech_S_SM2: putative nucleotidyltransferase; CGSHi22421_07693; phage(gi326781948) 5e-22 Click
461794312..1795247 lipid A biosynthesis lauroyl acyltransferase; CGSHi22421_07698 0.0 Click
471795243..1795256 attR    ATTAAAAGTGCGGT 0.0 Click
481795321..1797219 PHAGE_Pseudo_Lu11: topoisomerase IV subunit B protein; CGSHi22421_07703; phage(gi388684797) 3e-51 Click

Region 5, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11856595..1857038 PHAGE_Entero_mEp390: hypothetical protein; CGSHi22421_00567; phage(gi428782704) 5e-16 Click
21857086..1857413 PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; CGSHi22421_00572; phage(gi273809589) 3e-24 Click
31857464..1857634 hypothetical protein; CGSHi22421_00502 0.0 Click
4complement(1857932..1858342) hypothetical protein; CGSHi22421_00507 0.0 Click
5complement(1858335..1858601) hypothetical protein; CGSHi22421_00512 0.0 Click
6complement(1858585..1859340) Haemophilus-specific protein, uncharacterized; CGSHi22421_00517 0.0 Click
7complement(1859324..1859602) hypothetical protein; CGSHi22421_00522 0.0 Click
8complement(1859655..1860311) PHAGE_Entero_mEpX1: prophage repressor; CGSHi22421_00527; phage(gi428781915) 2e-26 Click
91860442..1860648 PHAGE_Entero_mEp213: prophage anti-repressor; CGSHi22421_00532; phage(gi428782642) 2e-13 Click
101860669..1860965 PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p14; CGSHi22421_00537; phage(gi31544012) 2e-31 Click
111861013..1861347 PHAGE_Bacter_2: DNA binding protein Roi; CGSHi22421_00542; phage(gi212499737) 2e-15 Click
12complement(1861348..1861703) PHAGE_Bacter_2: hypothetical protein APSE233; CGSHi22421_00602; phage(gi212499738) 1e-23 Click
13complement(1862025..1862519) hypothetical protein; CGSHi22421_00607 0.0 Click
14complement(1862615..1863526) PHAGE_Psychr_pOW20_A: recombinase; CGSHi22421_00612; phage(gi472339794) 3e-57 Click
15complement(1863539..1863832) hypothetical protein; CGSHi22421_00617 0.0 Click
16complement(1863829..1864134) PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00622; phage(gi273809599) 5e-06 Click
17complement(1864230..1864520) hypothetical protein; CGSHi22421_00627 0.0 Click
18complement(1864558..1864911) PHAGE_Salmon_vB_SemP_Emek: antirepressor; CGSHi22421_00577; phage(gi399498814) 5e-19 Click
19complement(1865141..1865761) hypothetical protein; CGSHi22421_00582 0.0 Click
20complement(1865866..1866672) hypothetical protein; CGSHi22421_00587 0.0 Click
211866933..1867208 PHAGE_Entero_phiFL3A: hypothetical protein; CGSHi22421_00592; phage(gi281416218) 2e-09 Click
22complement(1867183..1867386) PHAGE_Aggreg_S1249: hypothetical protein; CGSHi22421_00597; phage(gi273809595) 2e-23 Click