Listeria monocytogenes LO28 .1, whole genome shotgun sequence. [asmbl_id: NC_000000].2675580, GC%: 37.81%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 24 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(37132..37881) PHAGE_Parame_1: hypothetical protein; PP_00046; phage(gi9631622) 3e-31 Click
2complement(37842..38087) D-isomer specific 2-hydroxyacid dehydrogenase family protein [Listeria monocytogenes SLCC2479] gi|405757065|ref|YP_006686341.1|; PP_00047 2e-23 Click
338218..38856 PHAGE_Staphy_SA11: hypothetical protein; PP_00048; phage(gi422935622) 1e-05 Click
4complement(38879..39568) PHAGE_Acanth_mimivirus: probable methylated-DNA--protein-cysteine methyltransferase; PP_00049; phage(gi311978100) 8e-18 Click
5complement(39604..39933) hypothetical protein LM5578_2938 [Listeria monocytogenes 08-5578] gi|284803181|ref|YP_003415046.1|; PP_00050 3e-57 Click
6complement(39930..40544) hypothetical protein LMOSLCC2479_0075 [Listeria monocytogenes SLCC2479] gi|405757062|ref|YP_006686338.1|; PP_00051 1e-109 Click
7complement(40876..42660) PHAGE_Bacill_SPBc2: ABC transporter; PP_00052; phage(gi9630145) 4e-35 Click
8complement(42780..42911) hypothetical; PP_00053 0.0 Click
9complement(42904..43185) PHAGE_Bacill_SPBc2: ABC transporter; PP_00054; phage(gi9630145) 1e-06 Click
10complement(43289..44398) PHAGE_Bacill_SPBc2: ABC transporter; PP_00055; phage(gi9630145) 5e-05 Click
1144779..45372 hypothetical protein LM5578_2909 [Listeria monocytogenes 08-5578] gi|284803152|ref|YP_003415017.1|; PP_00056 1e-90 Click
1245408..45569 hypothetical protein LM5578_2908 [Listeria monocytogenes 08-5578] gi|284803151|ref|YP_003415016.1|; PP_00057 1e-14 Click
1345601..46524 PHAGE_Acanth_moumouvirus: putative triacylglycerol lipase; PP_00058; phage(gi441432487) 2e-19 Click
1446628..47338 Oxygen sensor protein DosP [Listeria monocytogenes N53-1] gi|470208884|ref|YP_007605458.1|; PP_00059 4e-132 Click
15complement(47308..48003) hypothetical protein LMOSLCC7179_0110 [Listeria monocytogenes SLCC7179] gi|404412216|ref|YP_006697803.1|; PP_00060 1e-126 Click
16complement(48223..48675) PHAGE_Lister_B025: gp36; PP_00061; phage(gi157325252) 1e-33 Click
17complement(48681..49016) PHAGE_Staphy_92: ORF019; PP_00062; phage(gi66396425) 4e-15 Click
1849233..49661 PHAGE_Lister_A118: gp61; PP_00063; phage(gi16798848) 2e-16 Click
1949673..50089 PHAGE_Lister_A500: gp62; PP_00064; phage(gi157325021) 1e-23 Click
2050364..50756 PHAGE_Strept_5: hypothetical protein SpyM3_1317; PP_00065; phage(gi28876399) 5e-06 Click
2150769..51281 PHAGE_Strept_5: hypothetical protein SpyM3_1316; PP_00066; phage(gi28876398) 5e-55 Click
2251329..51631 PHAGE_Strept_5: hypothetical protein SpyM3_1315; PP_00067; phage(gi28876397) 9e-08 Click
2351673..52077 PHAGE_Strept_5: hypothetical protein SpyM3_1314; PP_00068; phage(gi28876396) 7e-24 Click
2452064..53533 PHAGE_Propio_PAD20: Gp14; PP_00069; phage(gi330858412) 4e-47 Click

Region 2, total : 25 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
173667..73680 attL    TAAAGCGTTTTCAT 0.0 Click
287482..88360 PHAGE_Ostreo_OlV1: hypothetical protein; PP_00111; phage(gi313843974) 4e-05 Click
3complement(88384..88860) competence transcription factor [Listeria monocytogenes FSL R2-561] gi|386051304|ref|YP_005969295.1|; PP_00112 2e-88 Click
4complement(88851..90209) PHAGE_Lister_A118: putative integrase; PP_00113; phage(gi16798814) 0.0 Click
5complement(90275..90697) hypothetical protein LMOSLCC2479_2389 [Listeria monocytogenes SLCC2479] gi|405759376|ref|YP_006688652.1|; PP_00114 1e-76 Click
6complement(90710..90904) hypothetical protein LMOSLCC2479_2388 [Listeria monocytogenes SLCC2479] gi|405759375|ref|YP_006688651.1|; PP_00115 2e-29 Click
7complement(90888..91316) hypothetical protein LMOSLCC2479_2388 [Listeria monocytogenes SLCC2479] gi|405759375|ref|YP_006688651.1|; PP_00116 9e-74 Click
8complement(91339..91830) PHAGE_Lister_A118: gp33; PP_00117; phage(gi16798816) 7e-87 Click
9complement(92077..92295) PHAGE_Lister_A118: gp34; PP_00118; phage(gi16798817) 1e-30 Click
10complement(92351..92518) hypothetical protein LMOSLCC2479_2386 [Listeria monocytogenes SLCC2479] gi|405759373|ref|YP_006688649.1|; PP_00119 3e-23 Click
11complement(92675..92824) PHAGE_Lister_A500: gp33; PP_00120; phage(gi157324992) 3e-05 Click
12complement(92802..93152) PHAGE_Lister_A118: putative repressor protein; PP_00121; phage(gi16798819) 9e-16 Click
1393557..93823 PHAGE_Lister_A118: gp37; PP_00122; phage(gi16798821) 6e-44 Click
1494048..94284 PHAGE_Lister_A118: gp40; PP_00123; phage(gi16798826) 2e-39 Click
1594281..94562 PHAGE_Lister_A118: gp41; PP_00124; phage(gi16798827) 1e-43 Click
1694594..94755 hypothetical protein [Listeria monocytogenes J0161] gi|386047984|ref|YP_005966316.1|; PP_00125 5e-21 Click
17complement(94776..94991) hypothetical protein [Listeria monocytogenes J0161] gi|386047983|ref|YP_005966315.1|; PP_00126 1e-29 Click
1895055..95834 PHAGE_Lister_A118: putative anti-repressor promoter; PP_00127; phage(gi16798829) 1e-122 Click
1995959..96492 PHAGE_Lister_A118: gp43; PP_00128; phage(gi16798830) 2e-72 Click
2096489..96659 PHAGE_Lister_A118: gp44; PP_00129; phage(gi16798831) 9e-11 Click
2196811..96999 PHAGE_Lister_A118: gp45; PP_00130; phage(gi16798832) 8e-25 Click
2297078..97206 PHAGE_Lister_A500: gp41; PP_00131; phage(gi157325000) 3e-18 Click
2397301..97495 PHAGE_Lister_A500: gp42; PP_00132; phage(gi157325001) 3e-30 Click
2497492..97968 PHAGE_Lister_A500: gp43; PP_00133; phage(gi157325002) 2e-80 Click
2597973..98611 PHAGE_Lister_A500: gp44; PP_00134; phage(gi157325003) 9e-95 Click
2698625..99395 PHAGE_Lister_A118: gp49; PP_00135; phage(gi16798836) 1e-53 Click
27110875..110888 attR    TAAAGCGTTTTCAT 0.0 Click