Listeria monocytogenes FSL J2-064 .1, whole genome shotgun [asmbl_id: NC_000000].2828700, GC%: 37.88%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 34 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1286334..287023 PHAGE_Acanth_mimivirus: probable methylated-DNA--protein-cysteine methyltransferase; PP_00321; phage(gi311978100) 2e-18 Click
2complement(287045..288442) PHAGE_Lister_B025: Cps; PP_00322; phage(gi157325222) 5e-162 Click
3complement(288469..289185) PHAGE_Lister_B025: gp4; PP_00323; phage(gi157325221) 2e-68 Click
4complement(289182..290312) PHAGE_Lister_B025: gp3; PP_00324; phage(gi157325220) 0.0 Click
5290363..290752 PHAGE_Staphy_phiN315: hypothetical protein SA1800; PP_00325; phage(gi30043979) 3e-18 Click
6complement(290762..290911) PHAGE_Lister_B025: putative terminase large subunit; PP_00326; phage(gi157325219) 4e-19 Click
7complement(290868..292313) PHAGE_Lister_B025: putative terminase large subunit; PP_00327; phage(gi157325219) 0.0 Click
8complement(292403..292702) PHAGE_Lister_B025: gp1; PP_00328; phage(gi157325218) 2e-48 Click
9complement(292809..293006) PHAGE_Lister_B025: gp65; PP_00329; phage(gi157325282) 1e-36 Click
10complement(293123..293503) hypothetical protein LMOSLCC2540_1254 [Listeria monocytogenes SLCC2540] gi|405755333|ref|YP_006678797.1|; PP_00330 2e-54 Click
11complement(293710..294609) fibrinogen-binding protein [Lactococcus lactis subsp. lactis IO-1] gi|459285780|ref|YP_007508885.1|; PP_00331 4e-34 Click
12complement(294839..295264) PHAGE_Lister_B025: gp63; PP_00332; phage(gi157325280) 3e-35 Click
13complement(295265..295519) PHAGE_Lister_B025: gp62; PP_00333; phage(gi157325279) 4e-38 Click
14complement(295533..295796) PHAGE_Lister_B025: gp62; PP_00334; phage(gi157325279) 5e-09 Click
15complement(296173..296493) PHAGE_Lister_B025: gp61; PP_00335; phage(gi157325278) 3e-52 Click
16complement(296789..299131) PHAGE_Lister_B025: gp60; PP_00336; phage(gi157325276) 1e-148 Click
17complement(299154..299639) PHAGE_Lister_B025: gp59; PP_00337; phage(gi157325277) 3e-83 Click
18complement(299664..299855) PHAGE_Lister_B025: gp58; PP_00338; phage(gi157325275) 2e-29 Click
19complement(299863..300858) PHAGE_Lister_B025: gp58; PP_00339; phage(gi157325275) 1e-139 Click
20complement(300985..301677) PHAGE_Lister_B025: gp57; PP_00340; phage(gi157325274) 6e-122 Click
21complement(301696..302175) PHAGE_Lister_B025: gp56; PP_00341; phage(gi157325273) 8e-69 Click
22complement(302177..302560) PHAGE_Lister_B025: gp55; PP_00342; phage(gi157325272) 7e-59 Click
23complement(302557..302730) PHAGE_Lister_B025: gp54; PP_00343; phage(gi157325270) 8e-25 Click
24302835..303395 hypothetical protein lin1083 [Listeria innocua Clip11262] gi|16800152|ref|NP_470420.1|; PP_00344 4e-07 Click
25complement(303441..303941) hypothetical protein LMOSLCC2540_1242 [Listeria monocytogenes SLCC2540] gi|405755321|ref|YP_006678785.1|; PP_00345 1e-87 Click
26complement(303938..304138) hypothetical protein LMOSLCC7179_2539 [Listeria monocytogenes SLCC7179] gi|404414645|ref|YP_006700232.1|; PP_00346 7e-28 Click
27complement(304342..304932) PHAGE_Lister_B025: gp51; PP_00347; phage(gi157325268) 2e-54 Click
28complement(304929..305453) PHAGE_Lister_A500: gp52; PP_00348; phage(gi157325010) 4e-36 Click
29complement(305450..306019) PHAGE_Lister_B025: gp45; PP_00349; phage(gi157325262) 9e-32 Click
30complement(306016..306696) PHAGE_Lister_B025: gp44; PP_00350; phage(gi157325261) 7e-125 Click
31complement(306786..307157) Uncharacterized protein ymcA [Listeria monocytogenes serotype 4b str. LL195] gi|424714278|ref|YP_007014993.1|; PP_00351 4e-57 Click
32complement(307174..307977) phosphoesterase family protein [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404286822|ref|YP_006693408.1|; PP_00352 3e-152 Click
33complement(307983..308480) GNAT family acetyltransferase [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404286821|ref|YP_006693407.1|; PP_00353 8e-91 Click
34complement(308595..309884) PHAGE_Human__8: LANA; PP_00354; phage(gi139472804) 6e-06 Click

Region 2, total : 18 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1524127..526391 PHAGE_Lactoc_lato: putative tail lysin; PP_00600; phage(gi30089904) 6e-68 Click
2526384..528033 PHAGE_Lister_A006: gp16; PP_00601; phage(gi157325430) 4e-78 Click
3528046..530340 PHAGE_Lister_A006: gp17; PP_00602; phage(gi157325431) 3e-65 Click
4530330..531424 PHAGE_Lister_A006: gp17; PP_00603; phage(gi157325431) 1e-109 Click
5531474..531917 PHAGE_Lister_2389: Gp17-1 protein; PP_00604; phage(gi17488521) 4e-74 Click
6531896..532312 PHAGE_Lister_2389: Gp18 protein; PP_00605; phage(gi17488522) 1e-62 Click
7532333..532599 PHAGE_Lister_2389: holin; PP_00606; phage(gi17488523) 2e-36 Click
8532599..533450 PHAGE_Lister_A006: PlyA006; PP_00607; phage(gi157325435) 3e-40 Click
9complement(533528..534025) PHAGE_Lister_A006: gp22; PP_00608; phage(gi157325437) 1e-91 Click
10complement(534050..534499) PHAGE_Lister_A006: gp23; PP_00609; phage(gi157325438) 5e-80 Click
11complement(534505..534876) PHAGE_Lister_A118: gp29; PP_00610; phage(gi16798812) 8e-28 Click
12complement(534905..535138) PHAGE_Lister_A006: gp25; PP_00611; phage(gi157325440) 6e-26 Click
13535442..535675 PHAGE_Lister_A006: gp26; PP_00612; phage(gi157325441) 5e-37 Click
14536401..536520 hypothetical protein LMOSLCC2482_1283 [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404286650|ref|YP_006693236.1|; PP_00613 2e-13 Click
15536556..537029 Putative uncharacterized protein [Listeria monocytogenes serotype 4b str. LL195] gi|424714109|ref|YP_007014824.1|; PP_00614 6e-88 Click
16537135..537497 hypothetical protein LMOSLCC2540_1286 [Listeria monocytogenes SLCC2540] gi|405755365|ref|YP_006678829.1|; PP_00615 4e-64 Click
17538167..538472 leucine-rich repeat domain protein (LPXTG motif) [Listeria monocytogenes L99] gi|386008008|ref|YP_005926286.1|; PP_00616 3e-43 Click
18complement(538449..540218) PHAGE_Amsact_: similar to internalin A precursor; PP_00617; phage(gi9964606) 9e-24 Click

Region 3, total : 17 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1882679..883902 PHAGE_Feline_virus: polyprotein ab; PP_01016; phage(gi315192963) 2e-06 Click
2complement(884040..884297) hypothetical protein LMOSLCC2482_0884 [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404286251|ref|YP_006692837.1|; PP_01017 6e-43 Click
3884377..884754 endoribonuclease L-PSP [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404286252|ref|YP_006692838.1|; PP_01018 5e-61 Click
4885336..885728 antigen B [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404285497|ref|YP_006692083.1|; PP_01019 8e-67 Click
5885741..886253 PHAGE_Clostr_phi8074_B1: putative phage major tail protein; PP_01020; phage(gi431810369) 5e-19 Click
6886301..886603 PHAGE_Strept_5: hypothetical protein SpyM3_1315; PP_01021; phage(gi28876397) 9e-08 Click
7886645..887049 PHAGE_Strept_5: hypothetical protein SpyM3_1314; PP_01022; phage(gi28876396) 2e-24 Click
8887036..888904 PHAGE_Propio_ATCC29399B_C: putative tape measure; PP_01023; phage(gi410507479) 4e-48 Click
9888901..889719 PHAGE_Staphy_StB20: tail protein; PP_01024; phage(gi431809781) 6e-40 Click
10889729..890865 PHAGE_Lister_A500: gp18; PP_01025; phage(gi157324978) 5e-49 Click
11890855..891154 PHAGE_Deep_s_D6E: tail fiber protein; PP_01026; phage(gi423262345) 5e-05 Click
12891169..891744 hypothetical protein LMOL312_0130 [Listeria monocytogenes L312] gi|406702905|ref|YP_006753259.1|; PP_01027 1e-103 Click
13891759..892238 PHAGE_Deep_s_D6E: tail fiber protein; PP_01028; phage(gi423262345) 1e-05 Click
14892235..892771 PHAGE_Lister_B025: gp19; PP_01029; phage(gi157325236) 2e-13 Click
15892790..893212 PHAGE_Bacill_WBeta: phage holin; PP_01030; phage(gi85701395) 5e-32 Click
16893193..893921 PHAGE_Bacill_SPP1: hypothetical protein SPP1p051; PP_01031; phage(gi22855096) 5e-37 Click
17complement(893959..896307) PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; PP_01032; phage(gi15595921) 2e-07 Click

Region 4, total : 25 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(2356725..2357666) PHAGE_Synech_S_SM2: zinc-containing alcohol dehydrogenase superfamily protein; PP_02686; phage(gi326781942) 6e-09 Click
2complement(2357669..2358118) MarR family transcriptional regulator [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404285981|ref|YP_006692567.1|; PP_02687 2e-77 Click
32358287..2358493 hypothetical protein lse_0521 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289433888|ref|YP_003463760.1|; PP_02688 8e-30 Click
42359020..2359032 attL    AATAATGACTTTA 0.0 Click
52359024..2359347 PHAGE_Staphy_phi7401PVL: hypothetical protein; PP_02689; phage(gi448244651) 2e-07 Click
62359362..2359565 PHAGE_Lister_B025: gp38; PP_02690; phage(gi157325255) 6e-31 Click
72359567..2359809 PHAGE_Lister_B025: gp39; PP_02691; phage(gi157325257) 4e-44 Click
82360100..2360222 hypothetical; PP_02692 0.0 Click
92360232..2360384 PHAGE_Lister_B025: gp41; PP_02693; phage(gi157325258) 8e-22 Click
102360521..2361234 PHAGE_Lister_B025: gp42; PP_02694; phage(gi157325259) 4e-135 Click
112361245..2361445 PHAGE_Lister_B025: gp43; PP_02695; phage(gi157325260) 7e-32 Click
12complement(2361542..2362189) Uncharacterized membrane protein ylbC [Listeria monocytogenes serotype 4b str. LL195] gi|424714934|ref|YP_007015649.1|; PP_02696 8e-96 Click
13complement(2362337..2363074) protoheme IX farnesyltransferase [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404287482|ref|YP_006694068.1|; PP_02697 2e-135 Click
14complement(2363077..2363259) Protoheme IX farnesyltransferase [Listeria monocytogenes serotype 4b str. LL195] gi|424714935|ref|YP_007015650.1|; PP_02698 2e-25 Click
152363477..2364394 cytochrome aa3 assembly protein [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404287483|ref|YP_006694069.1|; PP_02699 1e-171 Click
162364502..2364867 cation channel transport protein [Listeria monocytogenes serotype 7 str. SLCC2482] gi|404287484|ref|YP_006694070.1|; PP_02700 1e-59 Click
172365072..2365437 PHAGE_Lister_B025: gp8; PP_02701; phage(gi157325226) 4e-63 Click
182365434..2365835 PHAGE_Lister_B025: gp9; PP_02702; phage(gi157325225) 3e-67 Click
192365832..2366215 PHAGE_Lister_B025: gp10; PP_02703; phage(gi157325227) 3e-64 Click
202366236..2366823 PHAGE_Lister_B025: Tsh; PP_02704; phage(gi157325228) 2e-107 Click
212366892..2367140 PHAGE_Lister_B025: gp12; PP_02705; phage(gi157325229) 2e-30 Click
222367438..2368148 PHAGE_Lister_B025: Tmp; PP_02706; phage(gi157325231) 2e-101 Click
232368429..2368968 PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; PP_02707; phage(gi15834113) 6e-48 Click
242368982..2370391 PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; PP_02708; phage(gi15834112) 1e-120 Click
252370408..2370420 attR    AATAATGACTTTA 0.0 Click
262370412..2371191 transcriptional repressor CodY [Listeria monocytogenes 08-5578] gi|284801665|ref|YP_003413530.1|; PP_02709 7e-138 Click
27complement(2371145..2372167) PHAGE_Frog_v_3: hypothetical protein FV3gorf50L; PP_02710; phage(gi49237347) 1e-05 Click