Yersinia bercovieri ATCC 43970 , whole genome shotgun [asmbl_id: NC_000000].4347293, GC%: 48.90%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 12 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11858415..1858426 attL    ATTTTCATTTAA 0.0 Click
21865057..1867612 PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; yberc0001_12640; phage(gi310831476) 3e-38 Click
3complement(1869109..1871442) PHAGE_Entero_P4: DNA primase; yberc0001_29930; phage(gi9627512) 0.0 Click
4complement(1871456..1871797) PHAGE_Entero_P4: hypothetical protein P4p07; yberc0001_29940; phage(gi9627513) 5e-16 Click
5complement(1872054..1872458) PHAGE_Entero_P4: putative CI repressor; yberc0001_29950; phage(gi9627516) 4e-30 Click
6complement(1872604..1872792) hypothetical protein; yberc0001_29960 0.0 Click
7complement(1872840..1873088) PHAGE_Entero_P4: transcriptional regulator; yberc0001_29970; phage(gi9627517) 4e-17 Click
81873697..1874416 PHAGE_Entero_P4: head size determination protein sid; yberc0001_29980; phage(gi9627518) 4e-20 Click
91874550..1874663 hypothetical protein; yberc0001_29990 0.0 Click
10complement(1874688..1874801) hypothetical protein; yberc0001_30000 0.0 Click
11complement(1875380..1875814) hypothetical protein; yberc0001_30010 0.0 Click
12complement(1876072..1877160) PHAGE_Entero_lambda: ea59; yberc0001_30020; phage(gi9626272) 6e-06 Click
131877284..1877295 attR    ATTTTCATTTAA 0.0 Click
14complement(1877434..1878645) PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; yberc0001_30030; phage(gi16130540) 2e-131 Click

Region 2, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12701559..2701570 attL    AATTATTTATTA 0.0 Click
2complement(2701645..2702673) PHAGE_Aeromo_phiO18P: putative integrase; yberc0001_26370; phage(gi148727179) 1e-89 Click
3complement(2703161..2704234) PHAGE_Lactob_Lj965: hypothetical protein Ljo_0304; yberc0001_26380; phage(gi41179236) 1e-68 Click
4complement(2704274..2705350) hypothetical protein; yberc0001_26390 0.0 Click
5complement(2705408..2705977) PHAGE_Entero_2: P2 CI-like protein; yberc0001_26400; phage(gi169936063) 1e-34 Click
62706214..2706339 hypothetical protein; yberc0001_26410 0.0 Click
72706372..2706875 PHAGE_Aeromo_phiO18P: putative cII protein; yberc0001_26420; phage(gi148727135) 4e-23 Click
82706888..2707091 hypothetical protein; yberc0001_26430 0.0 Click
92707094..2707468 hypothetical protein; yberc0001_26440 0.0 Click
102707477..2707884 hypothetical protein; yberc0001_26450 0.0 Click
112708015..2710102 PHAGE_Erwini_ENT90: replication protein A; yberc0001_26460; phage(gi431810936) 3e-132 Click
122710212..2710406 PHAGE_Salmon_RE_2010: hypothetical protein; yberc0001_26470; phage(gi418489693) 3e-07 Click
132710642..2711538 PROPHAGE_Escher_MG1655: predicted transposase; yberc0001_26480; phage(gi16131287) 5e-88 Click
142711703..2711816 hypothetical protein; yberc0001_26490 0.0 Click
152712083..2712268 hypothetical protein; yberc0001_26500 0.0 Click
16complement(2712275..2712391) hypothetical protein; yberc0001_26510 0.0 Click
17complement(2712458..2712760) PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_19; yberc0001_26520; phage(gi148727148) 2e-18 Click
18complement(2712811..2713767) PHAGE_Aeromo_phiO18P: putative portal protein; yberc0001_26530; phage(gi148727149) 7e-80 Click
192713770..2713907 PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; yberc0001_26540; phage(gi148727175) 2e-06 Click
202713918..2714502 PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; yberc0001_26550; phage(gi148727175) 3e-19 Click
212718293..2718304 attR    AATTATTTATTA 0.0 Click

Region 3, total : 41 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
13027540..3028199 PHAGE_Burkho_phi1026b: gp59; yberc0001_28410; phage(gi38707949) 3e-15 Click
2complement(3028402..3028965) PHAGE_Pseudo_JBD88a: hypothetical protein; yberc0001_28420; phage(gi448244687) 3e-05 Click
33029406..3031448 PHAGE_Haemop_SuMu: phage transposase; yberc0001_28430; phage(gi418489038) 2e-140 Click
43031491..3032381 PHAGE_Haemop_SuMu: phage transposase; yberc0001_28440; phage(gi418489040) 2e-63 Click
53032392..3032625 hypothetical protein; yberc0001_28450 0.0 Click
6complement(3032654..3032776) hypothetical protein; yberc0001_28460 0.0 Click
73032822..3033460 PHAGE_Burkho_phiE255: gp36; yberc0001_28470; phage(gi134288843) 2e-71 Click
83033462..3033653 hypothetical protein; yberc0001_28480 0.0 Click
9complement(3033677..3033793) hypothetical protein; yberc0001_28490 0.0 Click
103033824..3034450 PHAGE_Pseudo_B3: hypothetical protein B3ORF5; yberc0001_28500; phage(gi56692573) 6e-19 Click
113035147..3035638 hypothetical protein; yberc0001_28520 0.0 Click
123035731..3035868 hypothetical protein; yberc0001_28530 0.0 Click
133035897..3036217 hypothetical protein; yberc0001_28540 0.0 Click
143036318..3036587 PHAGE_Pectob_ZF40: hypothetical protein; yberc0001_28550; phage(gi422936662) 2e-06 Click
153036593..3037057 hypothetical protein; yberc0001_28560 0.0 Click
163037443..3037877 PHAGE_Pseudo_JBD24: hypothetical protein; yberc0001_28580; phage(gi448245065) 5e-18 Click
173037926..3038366 hypothetical protein; yberc0001_28590 0.0 Click
183038523..3039077 PHAGE_Cronob_ENT47670: putative endolysin; yberc0001_28600; phage(gi431810515) 1e-58 Click
193039354..3039887 hypothetical protein; yberc0001_28610 0.0 Click
203039902..3040132 hypothetical protein; yberc0001_28620 0.0 Click
213040243..3040416 hypothetical protein; yberc0001_28630 0.0 Click
223040476..3040919 PHAGE_Pseudo_JBD24: hypothetical protein; yberc0001_28640; phage(gi448245073) 2e-44 Click
233040954..3041109 hypothetical protein; yberc0001_28650 0.0 Click
243041114..3042769 PHAGE_Pseudo_MP42: phage uncharacterized protein; yberc0001_28660; phage(gi399528607) 0.0 Click
253042771..3044351 PHAGE_Pseudo_D3112: portal protein; yberc0001_28670; phage(gi38229139) 3e-123 Click
263044371..3045600 PHAGE_Pseudo_D3112: virion morphogenesis protein; yberc0001_28680; phage(gi38229140) 1e-62 Click
273046386..3047492 PHAGE_Pseudo_JBD24: hypothetical protein; yberc0001_28700; phage(gi448245084) 1e-58 Click
283047503..3047880 PHAGE_Pseudo_JBD5: hypothetical protein; yberc0001_28710; phage(gi448245024) 9e-24 Click
293047891..3048799 PHAGE_Pseudo_D3112: putative major head subunit protein; yberc0001_28720; phage(gi38229147) 6e-91 Click
303049266..3049694 PHAGE_Haemop_SuMu: Mu-like prophage protein gp36; yberc0001_28740; phage(gi418489087) 1e-17 Click
313049784..3050347 PHAGE_Haemop_SuMu: Mu-like prophage protein gp37; yberc0001_28750; phage(gi418489088) 1e-14 Click
323050472..3050588 hypothetical protein; yberc0001_28760 0.0 Click
333050740..3051996 PHAGE_Haemop_SuMu: tail sheath protein gpL; yberc0001_28770; phage(gi418489090) 7e-99 Click
343052386..3052772 hypothetical protein; yberc0001_28790 0.0 Click
353052910..3055078 PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; yberc0001_28800; phage(gi418489066) 9e-117 Click
363055093..3056394 PHAGE_Haemop_SuMu: DNA circulation protein; yberc0001_28810; phage(gi418489067) 1e-42 Click
373056567..3057610 PHAGE_Haemop_SuMu: Mu-like prophage tail protein gpP; yberc0001_28820; phage(gi418489068) 1e-60 Click
383057666..3058250 PHAGE_Haemop_SuMu: phage-related baseplate assembly protein gp45; yberc0001_28830; phage(gi418489069) 7e-54 Click
393058655..3059716 PHAGE_Haemop_SuMu: baseplate J family protein gp47; yberc0001_28850; phage(gi418489071) 1e-79 Click
403059731..3060282 PHAGE_Haemop_SuMu: hypothetical protein; yberc0001_28860; phage(gi418489072) 2e-32 Click
413060285..3061442 PROPHAGE_Salmon_Ty2: variable tail fiber protein; yberc0001_28870; phage(gi29143754) 4e-38 Click