Vibrio cholerae V52 , whole genome shotgun [asmbl_id: NC_000000].3974495, GC%: 47.41%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 11 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(1735392..1735736) PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; VCV52_1763; phage(gi24373865) 7e-08 Click
2complement(1735743..1736381) PHAGE_Entero_Mu: putative tape measure protein; VCV52_1764; phage(gi9633533) 4e-16 Click
3complement(1736918..1737277) PHAGE_Entero_Mu: hypothetical protein Mup41; VCV52_1765; phage(gi9633532) 2e-09 Click
4complement(1737326..1737703) hypothetical protein; VCV52_1766 0.0 Click
5complement(1737758..1738336) hypothetical protein; VCV52_1767 0.0 Click
6complement(1738355..1738675) transcriptional regulator, putative; VCV52_1768 0.0 Click
7complement(1738662..1739036) PHAGE_Entero_Mu: Mor; VCV52_1769; phage(gi9633507) 3e-07 Click
8complement(1739616..1739849) protein YciN; VCV52_1770 0.0 Click
9complement(1739846..1740307) hypothetical protein; VCV52_1771 0.0 Click
10complement(1740310..1741461) PHAGE_Pseudo_B3: putative transposase B subunit; VCV52_1772; phage(gi56692579) 1e-45 Click
11complement(1741391..1743148) PHAGE_Pseudo_B3: putative transposase A subunit; VCV52_1773; phage(gi56692580) 2e-93 Click

Region 2, total : 16 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12876412..2876424 attL    CTTTTCTTTTGCT 0.0 Click
2complement(2877718..2880648) PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; VCV52_1332; phage(gi399529005) 1e-05 Click
32881299..2881772 PHAGE_Pelagi_HTVC008M: peroxiredoxin; VCV52_1331; phage(gi460042634) 1e-24 Click
4complement(2881878..2885219) PHAGE_Ectoca_1: EsV-1-65; VCV52_1330; phage(gi13242537) 6e-38 Click
5complement(2885307..2885873) methyl-accepting chemotaxis protein; VCV52_1329 0.0 Click
6complement(2885999..2886871) PHAGE_Entero_Sf6: putative transposase OrfB; VCV52_1328; phage(gi41057343) 3e-115 Click
7complement(2886868..2887053) PHAGE_Entero_Sf6: gene 56 protein; VCV52_1327; phage(gi41057344) 7e-23 Click
8complement(2887219..2887998) PHAGE_Mannhe_phiMHaA1: tail protein T; VCV52_1326; phage(gi109289951) 8e-22 Click
9complement(2888394..2888753) PHAGE_Entero_Mu: hypothetical protein Mup41; VCV52_1325; phage(gi9633532) 2e-09 Click
10complement(2888802..2889173) 6-phospho-beta-glucosidase; VCV52_1324 0.0 Click
11complement(2889234..2889812) PTS system, N,N'-diacetylchitobiose-specific IIA component; VCV52_1323 0.0 Click
12complement(2889831..2890151) PTS system, cellobiose-specific IIC component; VCV52_1322 0.0 Click
13complement(2890138..2890512) PHAGE_Entero_Mu: Mor; VCV52_1321; phage(gi9633507) 3e-07 Click
14complement(2891092..2891325) deacetylase DA1; VCV52_1320 0.0 Click
15complement(2891322..2891783) conserved hypothetical protein; VCV52_1319 0.0 Click
16complement(2891786..2892628) PHAGE_Burkho_BcepMu: gp08; VCV52_1318; phage(gi48696918) 7e-49 Click
17complement(2892867..2894624) PHAGE_Burkho_BcepMu: gp09; VCV52_1317; phage(gi48696919) 4e-90 Click
182907518..2907530 attR    CTTTTCTTTTGCT 0.0 Click

Region 3, total : 23 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
13909621..3909632 attL    TGTGTGTGAGAA 0.0 Click
2complement(3920361..3921115) PHAGE_Entero_Sf6: putative transposase OrfB; VCV52_1456; phage(gi41057343) 8e-105 Click
33921377..3921520 protein YhbY; VCV52_0637 0.0 Click
43921542..3922207 DNA mismatch repair protein MutH; VCV52_0636 0.0 Click
5complement(3924799..3924950) TonB-dependent receptor; VCV52_0152 0.0 Click
63925348..3925974 cell division protein FtsY; VCV52_0150 0.0 Click
7complement(3925975..3926425) PHAGE_Megavi_lba: heat shock 70 kDa protein-like protein; VCV52_0717; phage(gi448825464) 6e-12 Click
8complement(3926449..3926964) chaperone protein HscB; VCV52_0716 0.0 Click
9complement(3927013..3927132) P-protein; VCV52_0715 0.0 Click
10complement(3927227..3927982) PHAGE_Burkho_KS14: gp37; VCV52_B0152; phage(gi327198306) 3e-10 Click
113928307..3929452 C4-dicarboxylate-binding periplasmic protein; VCV52_1998 0.0 Click
12complement(3930605..3931004) dihydropteroate synthase; VCV52_0640 0.0 Click
13complement(3931007..3931588) PHAGE_Cronob_vB_CsaM_GAP32: nudix hydrolase; VCV52_0639; phage(gi414087105) 2e-05 Click
14complement(3931548..3931694) hypothetical protein; VCV52_0638 0.0 Click
15complement(3932191..3932466) alpha/beta hydrolase; VCV52_B0001 0.0 Click
16complement(3932583..3932877) conserved hypothetical protein; VCV52_B0002 0.0 Click
17complement(3932922..3933992) PHAGE_Bacill_36: PcrA helicase; VCV52_0167; phage(gi156564011) 4e-75 Click
183933996..3934329 PHAGE_Vibrio_CTX: Zot; VCV52_B0039; phage(gi332672305) 2e-53 Click
19complement(3934496..3934771) protein-transport protein SecB; VCV52_B0040 0.0 Click
20complement(3934989..3935101) rhodanese domain protein; VCV52_B0041 0.0 Click
21complement(3935102..3935965) PHAGE_Cronob_vB_CsaP_GAP52: putative ribose-phosphate pyrophosphokinase; VCV52_2138; phage(gi414087562) 1e-22 Click
223936236..3936433 PHAGE_Vibrio_CTX: RstR; VCV52_B0010; phage(gi332672299) 5e-30 Click
233936621..3936896 para-aminobenzoate synthase glutamine amidotransferase component II; VCV52_B0011 0.0 Click
24complement(3937157..3937286) PHAGE_Vibrio_CTX: CtxB; VCV52_B0012; phage(gi332672307) 5e-18 Click
253945305..3945316 attR    TGTGTGTGAGAA 0.0 Click