Listeria monocytogenes serotype 1/2a str. F6854 strain 1/2a F6854 [asmbl_id: NC_000000].2950285, GC%: 37.85%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 26 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(492429..494210) PHAGE_Bacill_SPBc2: ABC transporter; LMOf6854_0120; phage(gi9630145) 7e-35 Click
2complement(494203..495945) PHAGE_Bacill_SPBc2: ABC transporter; LMOf6854_0121; phage(gi9630145) 1e-30 Click
3496088..496921 transcriptional regulator, AraC family; LMOf6854_0122 0.0 Click
4496957..498072 PHAGE_Acanth_moumouvirus: putative triacylglycerol lipase; LMOf6854_0123; phage(gi441432487) 8e-20 Click
5498176..498886 EAL domain protein; LMOf6854_0124 0.0 Click
6complement(498856..499551) conserved hypothetical protein; LMOf6854_0125 0.0 Click
7complement(499770..500222) PHAGE_Lister_A118: gp35; LMOf6854_0126; phage(gi16798818) 3e-29 Click
8complement(500228..500563) PHAGE_Staphy_92: ORF019; LMOf6854_0127; phage(gi66396425) 4e-15 Click
9500780..501208 PHAGE_Lister_A118: gp61; LMOf6854_0128; phage(gi16798848) 6e-16 Click
10501220..501636 PHAGE_Lister_A118: gp66; LMOf6854_0129; phage(gi16798853) 2e-22 Click
11501923..502303 PHAGE_Strept_5: hypothetical protein SpyM3_1317; LMOf6854_0130; phage(gi28876399) 5e-05 Click
12502316..502828 PHAGE_Clostr_phi8074_B1: putative phage major tail protein; LMOf6854_0131; phage(gi431810369) 5e-19 Click
13502876..503178 PHAGE_Strept_5: hypothetical protein SpyM3_1315; LMOf6854_0132; phage(gi28876397) 9e-08 Click
14503232..503624 PHAGE_Strept_5: hypothetical protein SpyM3_1314; LMOf6854_0133; phage(gi28876396) 5e-24 Click
15503611..505479 PHAGE_Propio_PAD20: Gp14; LMOf6854_0134; phage(gi330858412) 6e-48 Click
16505476..506294 PHAGE_Lister_A118: gp17; LMOf6854_0135; phage(gi16798800) 3e-44 Click
17506304..507440 PHAGE_Lister_A118: gp18; LMOf6854_0136; phage(gi16798801) 1e-48 Click
18507430..507729 PHAGE_Deep_s_D6E: tail fiber protein; LMOf6854_0137; phage(gi423262345) 5e-05 Click
19507744..508319 conserved hypothetical protein; LMOf6854_0138 0.0 Click
20508334..508813 PHAGE_Deep_s_D6E: tail fiber protein; LMOf6854_0139; phage(gi423262345) 1e-06 Click
21508810..509346 PHAGE_Lister_A118: gp20; LMOf6854_0140; phage(gi16798803) 4e-05 Click
22509365..509787 PHAGE_Bacill_WBeta: phage holin; LMOf6854_0141; phage(gi85701395) 6e-32 Click
23509756..510496 PHAGE_Bacill_SPP1: hypothetical protein SPP1p051; LMOf6854_0142; phage(gi22855096) 5e-37 Click
24complement(510535..512883) PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; LMOf6854_0143; phage(gi15595921) 3e-08 Click
25513077..513826 EAL domain protein; LMOf6854_0144 0.0 Click
26complement(513896..515404) PHAGE_Staphy_42E: ORF012; LMOf6854_0145; phage(gi66395520) 3e-18 Click

Region 2, total : 62 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11278387..1280660 PHAGE_Mycoba_Omega: gp203; LMOf6854_1428; phage(gi29566938) 2e-86 Click
2complement(1280694..1281533) pyrroline-5-carboxylate reductase, putative; LMOf6854_1429 0.0 Click
31281885..1282958 surface antigen; LMOf6854_1430 0.0 Click
41283392..1283863 PHAGE_Amsact_: putative ATP-binding cassette transporter; LMOf6854_1431; phage(gi9964444) 5e-08 Click
51283889..1284164 PHAGE_Lister_A006: gp25; LMOf6854_2335; phage(gi157325440) 1e-22 Click
61284193..1284564 PHAGE_Lister_A118: gp29; LMOf6854_2336; phage(gi16798812) 1e-27 Click
71284485..1284496 attL    ATGATTTAGAAA 0.0 Click
81284570..1285019 PHAGE_Lister_A118: gp28; LMOf6854_2337; phage(gi16798811) 4e-67 Click
91285044..1285541 PHAGE_Lister_A006: gp22; LMOf6854_2338; phage(gi157325437) 2e-91 Click
101285816..1286589 PHAGE_Lister_A006: gp21; LMOf6854_2339; phage(gi157325436) 8e-152 Click
11complement(1286630..1287475) PHAGE_Lister_A118: L-alanoyl-D-glutamate peptidase; LMOf6854_2340; phage(gi16798808) 1e-154 Click
12complement(1287475..1287756) PHAGE_Lister_A118: holin; LMOf6854_2341; phage(gi16798807) 1e-47 Click
13complement(1287769..1288134) PHAGE_Lister_A118: gp23; LMOf6854_2342; phage(gi16798806) 8e-63 Click
14complement(1288162..1288320) PHAGE_Lister_A118: gp22; LMOf6854_2343; phage(gi16798805) 7e-23 Click
15complement(1288325..1288642) PHAGE_Lister_A118: gp21; LMOf6854_2344; phage(gi16798804) 9e-58 Click
16complement(1288654..1289727) PHAGE_Lister_A118: gp20; LMOf6854_2345; phage(gi16798803) 0.0 Click
17complement(1289727..1290755) PHAGE_Lister_A118: gp19; LMOf6854_2346; phage(gi16798802) 0.0 Click
18complement(1290756..1291781) PHAGE_Lister_A118: gp18; LMOf6854_2347; phage(gi16798801) 0.0 Click
19complement(1291790..1292608) PHAGE_Lister_A118: gp17; LMOf6854_2348; phage(gi16798800) 2e-147 Click
20complement(1292610..1297973) PHAGE_Lister_A118: putative tape-measure protein; LMOf6854_2349; phage(gi16798799) 0.0 Click
21complement(1297984..1298589) PHAGE_Lister_A118: gp15; LMOf6854_2350; phage(gi16798798) 9e-113 Click
22complement(1298594..1299016) PHAGE_Lister_A118: gp14; LMOf6854_2351; phage(gi16798797) 4e-71 Click
23complement(1299068..1299361) PHAGE_Lister_A118: gp13; LMOf6854_2352; phage(gi16798796) 3e-39 Click
24complement(1299330..1299767) PHAGE_Lister_A118: major tail shaft protein; LMOf6854_2353; phage(gi16798795) 8e-75 Click
25complement(1299770..1300177) PHAGE_Lister_A118: gp11; LMOf6854_2354; phage(gi16798794) 3e-63 Click
26complement(1300177..1300515) PHAGE_Lister_A118: gp10; LMOf6854_2355; phage(gi16798793) 6e-52 Click
27complement(1300515..1300877) PHAGE_Lister_A118: gp9; LMOf6854_2356; phage(gi16798792) 2e-64 Click
28complement(1300877..1301272) PHAGE_Lister_A118: gp8; LMOf6854_2357; phage(gi16798791) 4e-67 Click
29complement(1301274..1301432) PHAGE_Lister_A118: gp7; LMOf6854_2358; phage(gi16798790) 3e-19 Click
30complement(1301432..1302268) PHAGE_Temper_1: major capsid protein; LMOf6854_2359; phage(gi16271809) 6e-61 Click
31complement(1302291..1302890) PHAGE_Lister_A118: putative scaffolding protein; LMOf6854_2360; phage(gi16798788) 3e-58 Click
32complement(1302969..1304108) PHAGE_Lister_A118: gp4; LMOf6854_2361; phage(gi16798787) 0.0 Click
33complement(1304114..1305559) PHAGE_Lister_A118: putative portal protein; LMOf6854_2362; phage(gi16798786) 0.0 Click
34complement(1305617..1306927) PHAGE_Strept_5093: putative terminase large subunit; LMOf6854_2363; phage(gi238801895) 3e-176 Click
35complement(1306920..1307675) PHAGE_Bacill_BCJA1c: terminase small subunit; LMOf6854_2364; phage(gi56694901) 3e-49 Click
36complement(1307759..1308469) PHAGE_Lister_A118: gp68; LMOf6854_2365; phage(gi16798855) 2e-130 Click
37complement(1308706..1309278) PHAGE_Staphy_SpaA1: sigma70, RNA polymerase sigma factor, positive control factor Xpf (C-terminal region); LMOf6854_2366; phage(gi399498918) 8e-12 Click
38complement(1309366..1309521) hypothetical gene lin2398 -related protein; LMOf6854_2367 0.0 Click
39complement(1309540..1309953) PHAGE_Lister_A500: gp59; LMOf6854_2368; phage(gi157325018) 9e-22 Click
40complement(1309957..1310361) PHAGE_Lister_A500: gp58; LMOf6854_2369; phage(gi157325017) 2e-62 Click
41complement(1310306..1310497) PHAGE_Lister_A500: gp57; LMOf6854_2370; phage(gi157325016) 2e-28 Click
42complement(1310516..1310998) PHAGE_Lister_A118: putative SSB protein; LMOf6854_2371; phage(gi16798847) 5e-88 Click
43complement(1310995..1311195) conserved hypothetical protein; LMOf6854_2372 0.0 Click
44complement(1311278..1311445) conserved hypothetical protein; LMOf6854_2373 0.0 Click
45complement(1311442..1311903) PHAGE_Brocho_A9: gp39; LMOf6854_2374; phage(gi327197682) 1e-20 Click
46complement(1311900..1312370) PHAGE_Lister_A500: gp54; LMOf6854_2375; phage(gi157325013) 6e-59 Click
47complement(1312367..1312810) PHAGE_Lister_A500: gp52; LMOf6854_2376; phage(gi157325010) 3e-47 Click
48complement(1312807..1313004) conserved hypothetical protein; LMOf6854_2377 0.0 Click
49complement(1313007..1313603) PHAGE_Lister_A118: gp51; LMOf6854_2378; phage(gi16798838) 4e-45 Click
50complement(1313600..1314412) PHAGE_Lister_2389: methylase; LMOf6854_2379; phage(gi17488539) 6e-153 Click
51complement(1314409..1315353) PHAGE_Lister_A118: gp49; LMOf6854_2380; phage(gi16798836) 2e-176 Click
52complement(1315373..1316188) PHAGE_Lister_A118: putative recombinase; LMOf6854_2381; phage(gi16798835) 2e-153 Click
53complement(1316191..1317150) PHAGE_Lister_A118: gp47; LMOf6854_2382; phage(gi16798834) 2e-175 Click
54complement(1317385..1317573) PHAGE_Lister_A118: gp45; LMOf6854_2383; phage(gi16798832) 4e-24 Click
55complement(1317894..1318427) PHAGE_Lister_A118: gp43; LMOf6854_2384; phage(gi16798830) 6e-74 Click
56complement(1318550..1319326) PHAGE_Lister_A118: putative anti-repressor promoter; LMOf6854_2385; phage(gi16798829) 6e-116 Click
57complement(1319589..1319870) PHAGE_Lister_A118: gp41; LMOf6854_2386; phage(gi16798827) 1e-33 Click
58complement(1320383..1320625) PHAGE_Lister_B054: gp42; LMOf6854_2387; phage(gi157325326) 2e-12 Click
591320781..1321257 PHAGE_Lister_A118: putative repressor protein; LMOf6854_2388; phage(gi16798819) 2e-12 Click
601321638..1322339 PHAGE_Lister_A118: gp33; LMOf6854_2389; phage(gi16798816) 7e-88 Click
611322360..1323040 PHAGE_Lister_A118: gp32; LMOf6854_2390; phage(gi16798815) 2e-05 Click
621322754..1322765 attR    ATGATTTAGAAA 0.0 Click
631323104..1324462 PHAGE_Lister_A118: putative integrase; LMOf6854_2391; phage(gi16798814) 0.0 Click
64complement(1324984..1325340) PHAGE_Clostr_PhiS63: gp36; LMOf6854_2393; phage(gi388570662) 4e-07 Click

Region 3, total : 21 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(2587189..2588325) PHAGE_Rhizob_3: p081; LMOf6854_0002; phage(gi195546611) 3e-31 Click
2complement(2588544..2591079) PHAGE_Lister_A006: gp15; LMOf6854_2661; phage(gi157325429) 0.0 Click
3complement(2591084..2591359) PHAGE_Lister_A006: gp14; LMOf6854_2662; phage(gi157325428) 8e-44 Click
4complement(2591392..2591823) PHAGE_Lister_A006: gp13; LMOf6854_2663; phage(gi157325427) 2e-72 Click
5complement(2591872..2592144) PHAGE_Lister_A006: Tsh; LMOf6854_2664; phage(gi157325426) 2e-15 Click
6complement(2592134..2592565) PHAGE_Lister_A006: Tsh; LMOf6854_2665; phage(gi157325426) 2e-61 Click
7complement(2592537..2592941) PHAGE_Lister_A006: gp11; LMOf6854_2666; phage(gi157325425) 2e-65 Click
8complement(2592938..2593255) PHAGE_Lister_A006: gp10; LMOf6854_2667; phage(gi157325424) 2e-51 Click
9complement(2593610..2593963) PHAGE_Lister_A006: gp8; LMOf6854_2668; phage(gi157325483) 6e-63 Click
10complement(2593964..2594119) PHAGE_Lister_A006: gp7; LMOf6854_2669; phage(gi157325482) 9e-13 Click
11complement(2594133..2595005) PHAGE_Lister_A006: Cps; LMOf6854_2670; phage(gi157325479) 7e-143 Click
12complement(2595028..2595582) PHAGE_Lister_A006: gp5; LMOf6854_2671; phage(gi157325467) 7e-103 Click
13complement(2595678..2596721) PHAGE_Lister_A006: gp4; LMOf6854_2672; phage(gi157325456) 0.0 Click
14complement(2596726..2598282) PHAGE_Lister_A006: gp3; LMOf6854_2673; phage(gi157325445) 0.0 Click
15complement(2598297..2599625) PHAGE_Lister_A006: TerL; LMOf6854_2674; phage(gi157325434) 0.0 Click
16complement(2599555..2600340) PHAGE_Lister_A006: TerS; LMOf6854_2675; phage(gi157325423) 8e-132 Click
17complement(2600380..2600607) PHAGE_Lister_A006: gp62; LMOf6854_2676; phage(gi157325481) 3e-33 Click
18complement(2601153..2601755) hypothetical protein; LMOf6854_2677 0.0 Click
19complement(2601782..2602219) PHAGE_Lister_A006: gp59; LMOf6854_2678; phage(gi157325477) 2e-69 Click
20complement(2602385..2602771) PHAGE_Lister_A500: gp59; LMOf6854_2679; phage(gi157325018) 2e-45 Click
21complement(2603124..2603315) PHAGE_Lister_A500: gp57; LMOf6854_2680; phage(gi157325016) 2e-28 Click

Region 4, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(2756056..2757033) PHAGE_Parame_1: Amindase; LMOf6854_2129; phage(gi9631852) 7e-24 Click
2complement(2757291..2758628) PHAGE_Halocy_JM_2012: chaperonin GroEL; LMOf6854_2130; phage(gi389060206) 1e-42 Click
32758751..2758867 PHAGE_Lister_A118: gp45; LMOf6854_2697; phage(gi16798832) 1e-14 Click
42759100..2760611 PHAGE_Lister_B054: gp49; LMOf6854_2696; phage(gi157325333) 8e-34 Click
52760604..2761515 PHAGE_Lactob_LF1: RecT protein; LMOf6854_2695; phage(gi418489428) 1e-12 Click
62761553..2762458 PHAGE_Lister_A500: gp45; LMOf6854_2694; phage(gi157325004) 3e-81 Click
72762462..2762659 hypothetical protein; LMOf6854_2693 0.0 Click
82762676..2762969 PHAGE_Lister_A500: gp47; LMOf6854_2692; phage(gi157325006) 2e-50 Click
92762966..2763175 PHAGE_Lister_A500: gp48; LMOf6854_2691; phage(gi157325007) 6e-30 Click
102763172..2763774 PHAGE_Lister_A118: gp51; LMOf6854_2690; phage(gi16798838) 5e-38 Click
112763952..2764359 PHAGE_Lister_A500: gp52; LMOf6854_2689; phage(gi157325010) 1e-12 Click
122764356..2764565 PHAGE_Lister_B025: gp47; LMOf6854_2688; phage(gi157325264) 2e-30 Click
132764562..2765047 PHAGE_Lister_A500: gp54; LMOf6854_2687; phage(gi157325013) 6e-56 Click
142765044..2765250 PHAGE_Lister_A511: gp20; LMOf6854_2686; phage(gi157325165) 9e-26 Click
152765250..2765510 hypothetical protein; LMOf6854_2685 0.0 Click
162765507..2765908 PHAGE_Lister_A118: gp59; LMOf6854_2684; phage(gi16798846) 3e-47 Click
172765905..2766405 conserved hypothetical protein; LMOf6854_2683 0.0 Click
182766402..2766884 PHAGE_Lister_A500: gp56; LMOf6854_2682; phage(gi157325015) 2e-79 Click
192766903..2767094 PHAGE_Lister_A500: gp57; LMOf6854_2681; phage(gi157325016) 2e-28 Click
20complement(2767300..2767511) translation elongation factor Ts; LMOf6854_1713 0.0 Click
21complement(2767651..2768400) ribosomal protein S2; LMOf6854_1714 0.0 Click
22complement(2768888..2769403) hypothetical protein; LMOf6854_1715 0.0 Click
23complement(2769544..2772069) PHAGE_Acanth_moumouvirus: isoleucyl-tRNA synthetase; LMOf6854_1716; phage(gi441432219) 6e-13 Click