Staphylococcus epidermidis M23864:W2(grey), whole genome shotgun [asmbl_id: NC_000000].2486756, GC%: 32.10%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 73 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1146821..146833 attL    TTTTAAATTTAGC 0.0 Click
2151850..151861 attL    TTATTTTAATTT 0.0 Click
3153745..153756 attL    ATATCTTATTAA 0.0 Click
4156014..157462 PHAGE_Phaeoc_virus_NC_021312: amino-oxidase family protein; HMPREF0794_0159; phage(gi508181926) 8e-07 Click
5157598..158152 hypothetical protein; HMPREF0794_0160 0.0 Click
6158467..158540 tRNA 0.0 Click
7158555..158630 tRNA 0.0 Click
8158641..158713 tRNA 0.0 Click
9158727..158802 tRNA 0.0 Click
10158820..158893 tRNA 0.0 Click
11158903..158977 tRNA 0.0 Click
12158979..159050 tRNA 0.0 Click
13complement(159228..160277) PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: integrase; HMPREF0794_0161; phage(gi399528924) 0.0 Click
14complement(160342..161079) PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_0162; phage(gi399528925) 2e-16 Click
15complement(161060..161521) PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn34; HMPREF0794_0163; phage(gi119953712) 3e-60 Click
16complement(161536..161850) PHAGE_Staphy_88_NC_007063: ORF050; HMPREF0794_0164; phage(gi66396381) 4e-41 Click
17162002..162214 PHAGE_Staphy_88_NC_007063: ORF064; HMPREF0794_0165; phage(gi66396388) 3e-33 Click
18162287..163003 PHAGE_Staphy_StB20_NC_019915: transcription antirepressor; HMPREF0794_0166; phage(gi431809735) 4e-91 Click
19163016..163225 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_0167; phage(gi399528932) 1e-34 Click
20complement(163352..163618) PHAGE_Clostr_vB_CpeS_CP51_NC_021325: hypothetical protein; HMPREF0794_0168; phage(gi509140075) 2e-12 Click
21163706..163882 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0169; phage(gi431809738) 2e-20 Click
22163937..164212 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0170; phage(gi431809739) 2e-44 Click
23164196..164411 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0171; phage(gi431809740) 4e-29 Click
24164404..165060 PHAGE_Staphy_StB20_NC_019915: ERF-like recombinase; HMPREF0794_0172; phage(gi431809741) 7e-98 Click
25165060..165482 PHAGE_Staphy_StB20_NC_019915: single-strand DNA binding protein; HMPREF0794_0173; phage(gi431809742) 2e-69 Click
26165496..166182 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn44; HMPREF0794_0174; phage(gi119953722) 2e-127 Click
27166160..166390 PHAGE_Lactoc_bIL311_NC_002670: repressor; HMPREF0794_0175; phage(gi13095660) 6e-07 Click
28166387..166608 PHAGE_Staphy_EW_NC_007056: ORF084; HMPREF0794_0176; phage(gi66395867) 2e-17 Click
29166605..167348 PHAGE_Staphy_42E_NC_007052: ORF016; HMPREF0794_0177; phage(gi66395524) 7e-89 Click
30167354..167707 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_0178; phage(gi399528939) 8e-65 Click
31167694..168944 PHAGE_Staphy_CNPH82_NC_008722: putative DNA helicase; HMPREF0794_0179; phage(gi119953725) 0.0 Click
32168941..169171 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0180; phage(gi431809748) 3e-26 Click
33169140..169364 PHAGE_Staphy_StauST398_5_NC_023500: hypothetical protein; HMPREF0794_0181; phage(gi588498331) 7e-24 Click
34169375..169763 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn50; HMPREF0794_0182; phage(gi119953728) 1e-63 Click
35169793..169984 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0183; phage(gi431809751) 1e-16 Click
36169985..170344 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0184; phage(gi431809752) 2e-30 Click
37170341..170775 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph57; HMPREF0794_0185; phage(gi119967889) 3e-78 Click
38170931..171458 PHAGE_Staphy_PH15_NC_008723: putative HNH endonuclease; HMPREF0794_0186; phage(gi119967890) 4e-98 Click
39171455..171655 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0187; phage(gi431809755) 1e-21 Click
40171639..171761 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph59; HMPREF0794_0188; phage(gi119967891) 2e-18 Click
41171969..172163 PHAGE_Staphy_2638A_NC_007051: ORF080; HMPREF0794_0189; phage(gi66395497) 2e-09 Click
42172164..172511 PHAGE_Staphy_vB_SepiS_phiIPLA7_NC_018284: DNA binding protein; HMPREF0794_0190; phage(gi399529174) 6e-47 Click
43172597..172884 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph63; HMPREF0794_0191; phage(gi119967895) 1e-38 Click
44172878..173054 hypothetical protein; HMPREF0794_0192 0.0 Click
45173059..173199 PHAGE_Staphy_vB_SepS_SEP9_NC_023582: hypothetical protein; HMPREF0794_0193; phage(gi589891545) 5e-08 Click
46173205..173384 PHAGE_Staphy_StB20_NC_019915: RinB; HMPREF0794_0194; phage(gi431809759) 2e-25 Click
47173385..173534 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0195; phage(gi431809760) 7e-21 Click
48173551..173997 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0196; phage(gi431809761) 1e-81 Click
49174530..174907 PHAGE_Staphy_StB20_NC_019915: HNH endonuclease; HMPREF0794_0197; phage(gi431809762) 9e-66 Click
50175086..175553 PHAGE_Staphy_JS01_NC_021773: putative terminase small subunit; HMPREF0794_0198; phage(gi526003597) 4e-23 Click
51175540..177234 PHAGE_Staphy_StB20_NC_019915: TerL; HMPREF0794_0199; phage(gi431809765) 0.0 Click
52177198..177440 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0200; phage(gi431809766) 2e-28 Click
53177443..178675 PHAGE_Staphy_StB20_NC_019915: portal HK97 family; HMPREF0794_0201; phage(gi431809767) 0.0 Click
54178659..179222 PHAGE_Staphy_StB20_NC_019915: prohead protease; HMPREF0794_0202; phage(gi431809768) 3e-100 Click
55179263..180618 PHAGE_Staphy_StB20_NC_019915: major head protein; HMPREF0794_0203; phage(gi431809769) 0.0 Click
56180637..180978 PHAGE_Staphy_StB20_NC_019915: DNA packaging protein; HMPREF0794_0204; phage(gi431809770) 2e-48 Click
57180968..181297 PHAGE_Staphy_StB20_NC_019915: phage head-tail joining protein; HMPREF0794_0205; phage(gi431809771) 2e-45 Click
58181294..181698 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0206; phage(gi431809772) 8e-46 Click
59181718..182107 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0207; phage(gi431809773) 2e-70 Click
60182120..182749 PHAGE_Staphy_StB20_NC_019915: major tail protein; HMPREF0794_0208; phage(gi431809774) 2e-112 Click
61182768..182953 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0209; phage(gi431809775) 1e-22 Click
62183017..183379 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0210; phage(gi431809776) 2e-59 Click
63183412..183564 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0211; phage(gi431809777) 2e-22 Click
64183593..188353 PHAGE_Staphy_StB20_NC_019915: tail tape measure protein; HMPREF0794_0212; phage(gi431809778) 0.0 Click
65188355..189188 PHAGE_Staphy_StB20_NC_019915: tail protein; HMPREF0794_0213; phage(gi431809781) 4e-164 Click
66189189..190757 PHAGE_Staphy_StB20_NC_019915: endopeptidase; HMPREF0794_0214; phage(gi431809782) 0.0 Click
67190750..190923 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0215; phage(gi431809783) 1e-24 Click
68190939..192801 PHAGE_Staphy_StB20_NC_019915: Zn carboxypeptidase; HMPREF0794_0216; phage(gi431809784) 0.0 Click
69192801..194015 PHAGE_Staphy_StB20_NC_019915: tail protein; HMPREF0794_0217; phage(gi431809785) 0.0 Click
70194008..194643 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0218; phage(gi431809786) 1e-118 Click
71194640..195065 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0219; phage(gi431809787) 4e-76 Click
72195052..195459 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0220; phage(gi431809788) 1e-69 Click
73195579..196733 PHAGE_Staphy_StB20_NC_019915: tail protein; HMPREF0794_0221; phage(gi431809789) 2e-117 Click
74196745..197098 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_0222; phage(gi399528921) 2e-65 Click
75197091..197237 PHAGE_Staphy_StB20_NC_019915: hypothetical protein; HMPREF0794_0223; phage(gi431809791) 1e-18 Click
76197298..197708 PHAGE_Staphy_StB20_NC_019915: holin; HMPREF0794_0224; phage(gi431809792) 9e-67 Click
77197683..199146 PHAGE_Staphy_StB20_NC_019915: lysin; HMPREF0794_0225; phage(gi431809795) 2e-156 Click
78199558..199569 attR    ATATCTTATTAA 0.0 Click
79complement(199721..200215) PHAGE_Staphy_phiSauS_IPLA88_NC_011614: integrase; HMPREF0794_0226; phage(gi215401172) 3e-69 Click
80200374..200586 PHAGE_Staphy_71_NC_007059: ORF007; HMPREF0794_0227; phage(gi66396047) 8e-20 Click
81complement(200966..201700) hypothetical protein; HMPREF0794_0228 0.0 Click
82complement(201782..201937) hypothetical protein; HMPREF0794_0229 0.0 Click
83202075..202086 attR    TTATTTTAATTT 0.0 Click
84complement(202227..202514) PHAGE_Staphy_phiRS7_NC_022914: integrase; HMPREF0794_0230; phage(gi560185986) 4e-10 Click
85complement(202676..203341) PHAGE_Lactob_prophage_Lj965_NC_005355: putative superinfection immunity protein; HMPREF0794_0231; phage(gi41179219) 5e-26 Click
86208760..208772 attR    TTTTAAATTTAGC 0.0 Click

Region 2, total : 71 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12009764..2009775 attL    AAATGATGAAAG 0.0 Click
22010180..2010191 attL    TTAATGGTAAAA 0.0 Click
3complement(2022467..2023843) PHAGE_Staphy_CNPH82_NC_008722: putative site-specifc recombinase; HMPREF0794_1897; phage(gi119953710) 0.0 Click
4complement(2023896..2024711) PHAGE_Staphy_vB_SepiS_phiIPLA7_NC_018284: hypothetical protein; HMPREF0794_1898; phage(gi399529148) 9e-152 Click
5complement(2024730..2025191) PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn34; HMPREF0794_1899; phage(gi119953712) 3e-82 Click
6complement(2025206..2025538) PHAGE_Staphy_CNPH82_NC_008722: putative cI-like repressor; HMPREF0794_1900; phage(gi119953713) 2e-56 Click
72025714..2025956 PHAGE_Staphy_CNPH82_NC_008722: putative cro-like repressor; HMPREF0794_1901; phage(gi119953714) 7e-42 Click
82025971..2026711 PHAGE_Staphy_StB20_NC_019915: transcription antirepressor; HMPREF0794_1902; phage(gi431809735) 5e-101 Click
92026818..2026994 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph43; HMPREF0794_1903; phage(gi119967875) 3e-27 Click
102027056..2027331 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn40; HMPREF0794_1904; phage(gi119953718) 1e-43 Click
112027315..2027527 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn41; HMPREF0794_1905; phage(gi119953719) 7e-32 Click
122027520..2028296 PHAGE_Staphy_52A_NC_007062: ORF016; HMPREF0794_1906; phage(gi66396283) 7e-130 Click
132028325..2028879 PHAGE_Staphy_tp310_3_NC_009763: hypothetical protein SPTP3103_gp16; HMPREF0794_1907; phage(gi156604033) 1e-92 Click
142028892..2029443 PHAGE_Staphy_88_NC_007063: ORF027; HMPREF0794_1908; phage(gi66396359) 2e-87 Click
152029444..2030130 PHAGE_Staphy_96_NC_007057: ORF018; HMPREF0794_1909; phage(gi66395903) 1e-105 Click
162030108..2030338 PHAGE_Lactoc_bIL311_NC_002670: repressor; HMPREF0794_1910; phage(gi13095660) 3e-07 Click
172030343..2031122 PHAGE_Staphy_37_NC_007055: ORF012; HMPREF0794_1911; phage(gi66395741) 1e-111 Click
182031135..2031905 PHAGE_Staphy_SAP_26_NC_014460: hypothetical protein SAP26_gp47; HMPREF0794_1912; phage(gi304443285) 3e-106 Click
192031899..2032060 PHAGE_Staphy_69_NC_007048: ORF101; HMPREF0794_1913; phage(gi66395362) 3e-11 Click
202032060..2032305 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1914; phage(gi119953727) 8e-41 Click
212032315..2032703 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn50; HMPREF0794_1915; phage(gi119953728) 3e-70 Click
222032733..2032924 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn52; HMPREF0794_1916; phage(gi119953730) 6e-26 Click
232032925..2033284 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn53; HMPREF0794_1917; phage(gi119953731) 1e-61 Click
242033281..2033724 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn54; HMPREF0794_1918; phage(gi119953732) 1e-46 Click
252033729..2033959 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_1919; phage(gi399528947) 7e-35 Click
262033965..2034579 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_1920; phage(gi399528948) 2e-114 Click
272034566..2034751 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn56; HMPREF0794_1921; phage(gi119953734) 9e-27 Click
282034739..2035095 PHAGE_Staphy_CNPH82_NC_008722: putative nuclease protein; HMPREF0794_1922; phage(gi119953735) 9e-64 Click
292035262..2035453 hypothetical protein; HMPREF0794_1923 0.0 Click
302035454..2035957 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: dUTPase; HMPREF0794_1924; phage(gi399528956) 9e-69 Click
312036006..2036176 PHAGE_Staphy_CNPH82_NC_008722: putative regulator RinB; HMPREF0794_1925; phage(gi119953740) 2e-23 Click
322036154..2036576 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn63; HMPREF0794_1926; phage(gi119953741) 5e-71 Click
332036564..2036704 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn64; HMPREF0794_1927; phage(gi119953742) 6e-18 Click
342036705..2036926 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph67; HMPREF0794_1928; phage(gi119967899) 2e-36 Click
352036944..2037360 PHAGE_Staphy_CNPH82_NC_008722: putative regulator RinA; HMPREF0794_1929; phage(gi119953743) 7e-77 Click
362037877..2038311 PHAGE_Staphy_CNPH82_NC_008722: putative small terminase subunit; HMPREF0794_1930; phage(gi119953679) 9e-76 Click
372038295..2039560 PHAGE_Staphy_CNPH82_NC_008722: putative large terminase subunit; HMPREF0794_1931; phage(gi119953680) 0.0 Click
382039566..2041002 PHAGE_Staphy_CNPH82_NC_008722: putative phage portal protein; HMPREF0794_1932; phage(gi119953681) 0.0 Click
392040959..2041906 PHAGE_Staphy_CNPH82_NC_008722: putative phage minor head protein; HMPREF0794_1933; phage(gi119953682) 7e-178 Click
402042000..2042593 PHAGE_Staphy_vB_SepiS_phiIPLA7_NC_018284: minor head protein; HMPREF0794_1934; phage(gi399529124) 7e-106 Click
412042611..2043441 PHAGE_Staphy_vB_SepiS_phiIPLA7_NC_018284: major head protein; HMPREF0794_1935; phage(gi399529125) 1e-152 Click
422043458..2043748 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn9; HMPREF0794_1936; phage(gi119953687) 5e-48 Click
432043748..2044062 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1937; phage(gi119953688) 2e-55 Click
442044055..2044384 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1938; phage(gi119953689) 3e-59 Click
452044377..2044790 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1939; phage(gi119953690) 6e-78 Click
462044803..2045240 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1940; phage(gi119953691) 3e-75 Click
472045227..2045766 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn14; HMPREF0794_1941; phage(gi119953692) 5e-101 Click
482045828..2046322 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1942; phage(gi119953693) 2e-87 Click
492046385..2046687 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn16; HMPREF0794_1943; phage(gi119953694) 4e-52 Click
502046690..2049794 PHAGE_Staphy_CNPH82_NC_008722: putative phage tape measure protein; HMPREF0794_1944; phage(gi119953695) 0.0 Click
512049810..2050748 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1945; phage(gi119953696) 1e-178 Click
522050762..2052618 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn19; HMPREF0794_1946; phage(gi119953697) 0.0 Click
532052633..2055299 PHAGE_Staphy_CNPH82_NC_008722: putative phage pre-neck appendage protein; HMPREF0794_1947; phage(gi119953698) 0.0 Click
542055299..2056831 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1948; phage(gi119953699) 0.0 Click
552056806..2057174 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1949; phage(gi119953700) 1e-54 Click
562057176..2057316 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn23; HMPREF0794_1950; phage(gi119953701) 8e-20 Click
572057356..2057763 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; HMPREF0794_1951; phage(gi399528917) 3e-66 Click
582057748..2058194 PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: exonuclease; HMPREF0794_1952; phage(gi399528918) 8e-75 Click
592058246..2060153 PHAGE_Staphy_CNPH82_NC_008722: amidase; HMPREF0794_1953; phage(gi119953703) 0.0 Click
602060208..2061290 PHAGE_Staphy_CNPH82_NC_008722: putative tail fiber; HMPREF0794_1954; phage(gi119953704) 9e-121 Click
612061301..2061645 PHAGE_Staphy_CNPH82_NC_008722: conserved phage protein; HMPREF0794_1955; phage(gi119953705) 2e-38 Click
622061638..2061784 PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein cn28; HMPREF0794_1956; phage(gi119953706) 4e-16 Click
632061831..2062340 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph25; HMPREF0794_1957; phage(gi119967857) 2e-89 Click
642062340..2062867 PHAGE_Staphy_PH15_NC_008723: hypothetical protein ph26; HMPREF0794_1958; phage(gi119967858) 2e-89 Click
652062922..2063191 PHAGE_Staphy_CNPH82_NC_008722: putative phage holin; HMPREF0794_1959; phage(gi119953707) 6e-41 Click
662063191..2064594 PHAGE_Staphy_phiETA3_NC_008799: amidase; HMPREF0794_1960; phage(gi122891851) 0.0 Click
67complement(2064838..2064966) pyridine nucleotide-disulfide oxidoreductase; HMPREF0794_1961 0.0 Click
68complement(2064971..2065393) transcriptional regulator; HMPREF0794_1962 0.0 Click
692065547..2065558 attR    TTAATGGTAAAA 0.0 Click
702065550..2066488 oxidoreductase, aldo/keto reductase family protein; HMPREF0794_1963 0.0 Click
712066949..2069630 PHAGE_Megavi_lba_NC_020232: hypothetical protein; HMPREF0794_1964; phage(gi448825668) 3e-09 Click
722069654..2070598 ABC transporter, substrate-binding protein, QAT family; HMPREF0794_1965 0.0 Click
732070948..2071517 transcriptional regulator, TetR family; HMPREF0794_1966 0.0 Click
742071728..2072402 PROPHAGE_Brucel_1330: transposase, putative; HMPREF0794_1967; phage(gi23502708) 2e-33 Click
752084734..2084745 attR    AAATGATGAAAG 0.0 Click